Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele41g1176 ATGTCTTATTTTCCTCAGACCGTTGCTCTCATTACTGTTGTCTCTTTTCCTGTCATTGCCTCATCTTCTTACTTCTTTCTGAACTTGTCGATTGAGGTGGCTGTAGGAGAAGGAGGTATGGTGTGGAACGAAGACGAACGAGACATGGTGGCGGCGGTTCTCGGCGCTCGAGCTTTCGATTACTTGGTGAACCACTCGGTTTCTAATGATAATCTGTTAATGGCCGTCGTCACCGACGAGAATCTCCAGAAGAAGCTCTCGGATCTCGTGGAGCGTCCAAACGTATCGAATTTCACCTGGAACTACGCCATTTTCTGGCAAATTTCTCAGTCAAAATCCGGCGAATGGGTCTTAGGTTGGGGCGATGGGTGTTGCGGAGAACCCGACGAAGCAGAAGAAGACGGATTAAAAGCGATTCTCAGCCTTCGCATGGAGGATGAAGTTCAGCAAAGGATGAGGAAGAGAGTGTTGCAGAAGCTTCACACAACCTTTGGTGGTTCAGAAGAAGACAATTACGTTCATGGATTAGACCGGGTCACTGACACCGAGTTGTTCTTTCTGGCTTCTATGTACTTCTCTTTCCCTCGTGGCCATGGCGGTCCAGGTAAGTGTCTTGCGTCTGGTAAACATTTATGGCTCACAGATGCTCAGAAATCTGCAGTTGATTATTGTGTGAGATCGTTTCTGGTTAAATCCGCCGGAATCCAGACTGTTGTTTTGATCCCTACTGATATGGGAGTGGTTGAACTGGGTTCTATGAAGTTGGTGAAGGAGAACTTAGAATTGTTGCAGGCAATCCAATCGGAGTTTTCCATTGCATCTACATTCCCGAGAGCTAAGTCGTCAATTCCACCACCGACTCCTCCTGCTCCTGCTCCTGCTCCTCCGTTGACGGCGGACAAAAGAGATGCACTTCCCATGTTGCCGGTTTTAACAGTTTCTGACAAAGTCGAAGTAGTTCCAAAGATTTTCGGGCAGGATTTGAACAAGACGAACCCGGTTCGAACCACCCAGTTCAGAGAGAAACTTGCAATTAGGAAAATGGAGGACAGGCCATGGTTAGGAGGTCATCATCATCTCTCCAATGGGGTTCATGCTCATCCTCATCCTCATCGTAATGGTGTTCATCCTTCAAGTTGGACAACGGCAGCTACTAATAATAACAGTCTTGTTGATCAAACTTATGTTTCTAGATCGCCGGCGACGAGCAATGTGCCGGTTCTGGACCTTGTAAATGGCGTTAACATGCCACAAATGAAAGCTCCATTGCAGATTGATTTTTCAGGAGCTACTTCCAGATCTGCTGTGACTGCCGTGAGACCAAATGGTGGTGAATCAGAGCAATCTGATGCTGATGCTGCTTCATTCAGGGAGGAGCTGACGGCCGGAGGAGGAGGAGGAGCCGATGAACGGCGGCCGAGGAAACGAGGGAGGAAGCCGGCGAACGGCAGGGAAGAACCTCTGAACCATGTGGAAGCTGAGAGACAGAGGCGCGAGAAACTGAACCAACGGTTCTATGCTTTAAGAGCTGTGGTGCCTAATATCTCCAAGATGGACAAAGCCTCCTTGCTGGGAGACGCCATTGCTTACATCAATGAGCTTCAGGCAAAGCTTAGGGCAATGGAAACTGAGAGAGAGATCAGACTTGGAGGAAGCACTTCGAGTGATCAATCGTTAGATCCCAGCAATATTCAACAATCTCCTAGTCAAGTGGAAGTCCACGCCCATCACGACGAGGTTGTCGTGAGGGTGATCTCGCCCATCAATTCCCACCCGGTCTCGGCAGTGATCAGAGCGCTGAAAGAAGCACAAGTGAACATCGTTGATTCGAAGCTCGCCGCCGCGAACGAAGCCGTGTTGCACACATTTGTGATCAAGCCTCAAGGAGCTGATCAGCAGCTGACAAGGGAGAAGTTGATGGCTGCATTCTCCCGCGAATCCAATTCCTCGGAACCATTTTCATTGACTGTTCTGGATCCTAAAGTTCTTGTATTCATCCAAGATCTGTGCATAAGAGTAAAAGTATTAGTAAAATTCTTCAACTGCTTGTCTCACCTTGGAATCAGATCTCAAGTACAGGATACGCGGGTTCATGTTTTTGTCTTGTCCGAGATTGCTCTGTTGCTTGCTTGCCTTGAGTCTGAGCATGCTCTCACATCAGGAAACCAGCACGTGGAGGAGAGCCCTTCAAACATTTCATTTTTCTTGCGGGTGGGTTCAGATATGTACTACGAGGTATAA 2241 0.4824 MSYFPQTVALITVVSFPVIASSSYFFLNLSIEVAVGEGGMVWNEDERDMVAAVLGARAFDYLVNHSVSNDNLLMAVVTDENLQKKLSDLVERPNVSNFTWNYAIFWQISQSKSGEWVLGWGDGCCGEPDEAEEDGLKAILSLRMEDEVQQRMRKRVLQKLHTTFGGSEEDNYVHGLDRVTDTELFFLASMYFSFPRGHGGPGKCLASGKHLWLTDAQKSAVDYCVRSFLVKSAGIQTVVLIPTDMGVVELGSMKLVKENLELLQAIQSEFSIASTFPRAKSSIPPPTPPAPAPAPPLTADKRDALPMLPVLTVSDKVEVVPKIFGQDLNKTNPVRTTQFREKLAIRKMEDRPWLGGHHHLSNGVHAHPHPHRNGVHPSSWTTAATNNNSLVDQTYVSRSPATSNVPVLDLVNGVNMPQMKAPLQIDFSGATSRSAVTAVRPNGGESEQSDADAASFREELTAGGGGGADERRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAIAYINELQAKLRAMETEREIRLGGSTSSDQSLDPSNIQQSPSQVEVHAHHDEVVVRVISPINSHPVSAVIRALKEAQVNIVDSKLAAANEAVLHTFVIKPQGADQQLTREKLMAAFSRESNSSEPFSLTVLDPKVLVFIQDLCIRVKVLVKFFNCLSHLGIRSQVQDTRVHVFVLSEIALLLACLESEHALTSGNQHVEESPSNISFFLRVGSDMYYEV 746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele41g1176 746 MobiDBLite consensus disorder prediction 464 496 - -
Lele41g1176 746 MobiDBLite consensus disorder prediction 278 297 - -
Lele41g1176 746 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 82 270 IPR025610 -
Lele41g1176 746 CDD bHLH_AtAIB_like 482 547 - -
Lele41g1176 746 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 485 534 IPR011598 GO:0046983
Lele41g1176 746 Coils Coil 524 544 - -
Lele41g1176 746 MobiDBLite consensus disorder prediction 363 384 - -
Lele41g1176 746 PANTHER MYC 69 642 IPR045084 GO:0003700|GO:0006355
Lele41g1176 746 SMART finulus 491 540 IPR011598 GO:0046983
Lele41g1176 746 MobiDBLite consensus disorder prediction 281 296 - -
Lele41g1176 746 Pfam Helix-loop-helix DNA-binding domain 489 535 IPR011598 GO:0046983
Lele41g1176 746 FunFam Transcription factor bHLH13 478 549 - -
Lele41g1176 746 MobiDBLite consensus disorder prediction 547 567 - -
Lele41g1176 746 Gene3D - 479 548 IPR036638 GO:0046983
Lele41g1176 746 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 488 548 IPR036638 GO:0046983
Lele41g1176 746 MobiDBLite consensus disorder prediction 460 496 - -
Lele41g1176 746 MobiDBLite consensus disorder prediction 548 567 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele41g1176 Lele-ChrLele41 20790278 20793369 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele41g1176 38 650 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G01260 48.377 0.0 552
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele41g1176 bHLH-MYC_N 6.4e-55 CL0161