Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele41g1173 ATGGCACATCTGGGCTGTAATCTCATAGGCCCGACCAGTTCTCCGGCGGATACAGGTTTGGAAGATGACGATCCGTATACAGAGTTATGGAAGTTATGCGCTGGGCCTCTGGTGGATGTTCCTCGAACTGGGGAGAGAGTTTTTTACTTCCCTCAGGGTCACATGGAACAATTGCAAGCATCAACGAATCAGGAATTGAACCAACAAATTCCCCATTTCAACATTTCATCTAAGATTCTATGCCGTGTTATGCACATTCAGTTATTGGCGGAACCAGACACTGATGAAGTTTATGCTCGTATTACTTTGCTTCCAGAATCTGATCAAACTGAGCCTACCAGCTCTGATCCATGTCCACCAGAGACTCGGACACAGGCTTTTCATTCATTTTGCAAAATACTAACAGCATCTGATACTAGCACTCATGGAGGATTTTCAGTTCTGCGGAAGCATGCTAATGAGTGTTTGCCTCAATTGGACATGACCCAAGCAACCCCTACTCAGGAGTTAGCAGCAAAGGATCTTCATGGGTTTGAGTGGAAATTTAAGCATATATTCAGAGGTCAACCAAGGAGACACTTGCTTACAACTGGCTGGAGTACATTTGTCACTTCCAAAAGATTGGTAGCTGGAGACGCATTCGTGTTTTTGAGGGGAGAGAATGGAGAACTGAGAGTTGGTGTCCGGCGCCTTGCCCGGCAACAGAGTCCGATGCCTTCATCTGTGATATCAAGCCAGAGCATGCATCTTGGAGTGCTTGCCACTGCTTCCCATGCTGTTGCCACTCGTACCATGTTTGTAGTTTACTACAAACCAAGGACTAGGCAGTATATTATTGGTTTAAACAAATACCTGGTCGCGATCAACAATAAGTTAACAGTTGGCATGCGTTTCAAGATGAGATTTGAGGGGGATGATTCACCTGAGAGAAGGTTTTCAGGAACTATTGTTGGAGTTGGCGATTTATCTGCAGAGTGGCCAGACTCAAAGTGGCGGTCATTGAAGGTACAATGGGATGAACCAGCAACAATCCCAAGGCCAGAGAGGGTTTCTCCCTGGGAAATAGAACCTTTTGTTACTTCTGCACCTGTAAATCTCGTTCAACCAGCTGTAAAGAGCAAAAGATCTCGGCCTGCTGATGTTCCATCTTCTGAAATGGTTTCCAATTCAGCTGCTTCAGCTTTCTGGTATCAGGGGCCATCCCAGTCCCATGAGCTTGCTCAATTAGGTGGCTCAACAGAAGCCCAAAGTAATGAAAATCAGGTTTTATGGAGCACGAGGCAGAACAACAACATGAATGGCAATGCAATGAACAATAGTAGCTCCTGCAAGTCTAGAGTCCGGGTTGAAGGAGCGTGGCCTCCATCACATTTGAACATCTCTTCAAACTGTTTTCTCGACCCCAAAAACAACAAATCTGTTGCAGTTCAATCGTCTATCGCTTGCTGGCCAAATGATTCTCCTCCAGCATATGATCAAGTTGAGAATGGGAAGAAATCTGAGAATCCCGTGGGTTGCCGGCTATTTGGGGTCAATTTGACTAACAACTCTAACAATGTTACTCCTCTAGAGAAAGAGTCAAGAGGCTGCACTGCTAGTCCTAGTGGTTCCAAAGAATCTGTTCCTGTTGCAGCTTGTGAAACTAAGACAAGTCAGAATCCCAATTGTTCAGTGTCCATAAAGGAGCAGAAGCAAGTAACATCTAATGCATCACCAAATGAGAGGCAGAGCAAGCAGGCATCCTTACCATCTACTAGGACTCGCACGAAGGTACAAATGCAAGGAGTGGCCGTTGGTCGTGCTGTTGACTTGACTATGTTGAATGGCTACGACAGTCTGATAGAAGAGCTCGAAAGGTTGTTCAACATTAAAGGGGAGCTTCGTACACAAGACAAATGGAAGGTTACTTTCATAGATGATGAGAATGAGAGGATGCTCATGGGCGATGATCCGTGGCCGGAGTTTTGCAAAATGGTGAAGAGGATTACCATATATTCAAGTGAGGAATTGAAGAAGATGAATGCAACATGCCCGGTTACTGCATCTTCATCAGAGGATGATGAAACTCTGATCACTGTGAATTCACAGAATAAGGATGAAAGTCAGCAAAATTTAATCTCTTGA 2124 0.4492 MAHLGCNLIGPTSSPADTGLEDDDPYTELWKLCAGPLVDVPRTGERVFYFPQGHMEQLQASTNQELNQQIPHFNISSKILCRVMHIQLLAEPDTDEVYARITLLPESDQTEPTSSDPCPPETRTQAFHSFCKILTASDTSTHGGFSVLRKHANECLPQLDMTQATPTQELAAKDLHGFEWKFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFLRGENGELRVGVRRLARQQSPMPSSVISSQSMHLGVLATASHAVATRTMFVVYYKPRTRQYIIGLNKYLVAINNKLTVGMRFKMRFEGDDSPERRFSGTIVGVGDLSAEWPDSKWRSLKVQWDEPATIPRPERVSPWEIEPFVTSAPVNLVQPAVKSKRSRPADVPSSEMVSNSAASAFWYQGPSQSHELAQLGGSTEAQSNENQVLWSTRQNNNMNGNAMNNSSSCKSRVRVEGAWPPSHLNISSNCFLDPKNNKSVAVQSSIACWPNDSPPAYDQVENGKKSENPVGCRLFGVNLTNNSNNVTPLEKESRGCTASPSGSKESVPVAACETKTSQNPNCSVSIKEQKQVTSNASPNERQSKQASLPSTRTRTKVQMQGVAVGRAVDLTMLNGYDSLIEELERLFNIKGELRTQDKWKVTFIDDENERMLMGDDPWPEFCKMVKRITIYSSEELKKMNATCPVTASSSEDDETLITVNSQNKDESQQNLIS 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele41g1173 707 Pfam AUX/IAA family 570 670 IPR033389 -
Lele41g1173 707 ProSiteProfiles B3 DNA-binding domain profile. 130 232 IPR003340 GO:0003677
Lele41g1173 707 MobiDBLite consensus disorder prediction 517 589 - -
Lele41g1173 707 Pfam B3 DNA binding domain 130 230 IPR003340 GO:0003677
Lele41g1173 707 Pfam Auxin response factor 256 335 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lele41g1173 707 FunFam Auxin response factor 291 362 - -
Lele41g1173 707 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 26 674 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lele41g1173 707 Gene3D - 291 363 - -
Lele41g1173 707 Gene3D - 127 231 IPR015300 -
Lele41g1173 707 SMART B3_2 130 232 IPR003340 GO:0003677
Lele41g1173 707 SUPERFAMILY DNA-binding pseudobarrel domain 121 259 IPR015300 -
Lele41g1173 707 CDD B3_DNA 128 230 IPR003340 GO:0003677
Lele41g1173 707 FunFam Auxin response factor 581 674 - -
Lele41g1173 707 SUPERFAMILY CAD & PB1 domains 581 664 - -
Lele41g1173 707 FunFam Auxin response factor 128 232 - -
Lele41g1173 707 MobiDBLite consensus disorder prediction 1 21 - -
Lele41g1173 707 ProSiteProfiles PB1 domain profile. 586 667 IPR000270 GO:0005515
Lele41g1173 707 Gene3D - 582 674 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele41g1173 Lele-ChrLele41 20740158 20744337 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele41g1173 26 673 B3 DNA Binding Superfamily AT4G23980 56.146 0.0 664
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lele41g1173 AUX_IAA 1.2e-10 CL0072