Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele41g1164 ATGGATTCTGGGGTTGAATCAGCATCGCCAGAAAACGATGGAACAGGGACAAAAGAGCCTGCTCGGTTCGAGGAGGATTTTGCAGAGAAAGACCCAACTGGCCGATATATCCGGTATAATGAAATCTTAGGCAAGGGTGCTTTCAAGACTGTTTATAGGGCCTTTGATGAAGTTGATGGAATCGAAGTTGCATGGAACCAAGTTAGGATTGACGACCTTTTGCGGTCAGCAGCAGACCTAGCAAAACTGTACTCTGAAGTTCACATACTGAAGTCTTTGAAACATGAGAATATTATGAAGTTCTATCATTCTTGGGTTGACGATAAGAACAAATCTGTTAACATGATCTCCGAGTTCTTCACATCAGGAACTTTAAGACAATACCGTAGGAAGCATAAAAATGTCGACATGAAGGCCATCAAAGGTTGGGCTAGGAAGATTCTCCAAGGTTTAGCCTACATCCATAGTCAAAAGCCTCCAATTATTCACAGAGACTTGAAATGTGACAACATCTTTGTGAATGGAAACCATGGAGAAATTAAGATAGGAGACCTAGGCTTGGCGACTGTGATGCAGCAACCAGTTGCTCGAAGTGTCATTGAGGAATACAACGAGCTTGTTGACATCTATTCTTTTGGGATGTGCATACTAGAGATGGTTACTTTTGAGTATCCCTATAGTGAATGCAAAAATCCAGCTCAAATATTTAAGAAAGTTACCACTGGTATCAAGCCTGCTTCTCTTAATAGGGTGAATGACCCCCAAATTAGAGAGTTCATTGAAAAATGTTTGGTTCCAGCGTCCGAGAGATTGTCGGCGGAGGATCTTCTCAAAGACCCATTTTTGCAAGTCGAGAATCCAAAGAATCCAATCCGAGATCCTTTACAGCTGCCTCCTCAAACTCCAAGATCTATAGATTTGTCCAGGTCTGGTCCTTTATCTATGGACATAGATGCTGACTATAACCAGATTTCTGTGAGTACCTTTGCTGAAAGCAACTGCGGAAGCACTCAGTCTCCAATTCTAGAATTCCAGAGGATATCTGAGGAGAATGAATTTAGGTTGAAAGGGACAAAAAATGATGATAGATCTGTATCGTTGACCTTGCGTATTGCGGATTCGTCTGGTCGAGTTAGGAATATACATTTTCTCTTTTATCTTGATTCAGACACTGCAGTCTCAGTGGCCTCAGAGATGGTTGAACAACTAGAGTTAGCAGAACATGATGTGACCTTCATTGCCGGGCTTATCGATCATTTGATAACAAAACTTCTACCTGGCTGGAAACCTTCGTCTGATTATTCCTCAAGTGAAGTAACAAGCCTCAATGGTGGTGGGTCTTCAACACTTGTAGATGGCCAGACCCAAACAAGTCTATGGGATTCCATCCTAACAAGTGATGCTGCTGCACTAGTTATGTACCAAGACGACGTGTTAGGGCCGATTACTGATGATCAAAACAGTGAGGTTACACATGAGGAGGGCTGCTTGCCGGCTGACACTGTTAATAATGCTACTTTTCATGGTGAGTGTAATTCTCCTCCCACTTTGGCTGACTTGGAATATCAATATTCACAAGGATCCGCAACCTCTGCGCTAGTTGCTAAAGATTCATCGATAAAAATTGACAACTTTCTCGATTTCAATGGGAGCTCTAAATCCTTGAGTTGGTCTCTCTCTGAACTGGATCATGGGGATACATATCCTGAGGCTTGCAAATTGCAGAGAACACTAGATAACAGCTTTATGAAGAATGAAATGATTCCGCCATTCAATGGAACATATAATGCTTTTAGCTTGACAAGCAGCTGTTCTTCATTGTCTTTAGCAGAGGAGAACGCAGATTCTGAGCTGAAGTTGGAAATTGATGCAATCAAGGCTTTCTATCGCGAACAGTTTCAAGAACTTTCTAGAAGGAAGTTGGCGCATTTGGATCTCATCAGAAAGAGATGGATGGCTAAGAAGAAATTGACTGTTCATTGA 1983 0.4196 MDSGVESASPENDGTGTKEPARFEEDFAEKDPTGRYIRYNEILGKGAFKTVYRAFDEVDGIEVAWNQVRIDDLLRSAADLAKLYSEVHILKSLKHENIMKFYHSWVDDKNKSVNMISEFFTSGTLRQYRRKHKNVDMKAIKGWARKILQGLAYIHSQKPPIIHRDLKCDNIFVNGNHGEIKIGDLGLATVMQQPVARSVIEEYNELVDIYSFGMCILEMVTFEYPYSECKNPAQIFKKVTTGIKPASLNRVNDPQIREFIEKCLVPASERLSAEDLLKDPFLQVENPKNPIRDPLQLPPQTPRSIDLSRSGPLSMDIDADYNQISVSTFAESNCGSTQSPILEFQRISEENEFRLKGTKNDDRSVSLTLRIADSSGRVRNIHFLFYLDSDTAVSVASEMVEQLELAEHDVTFIAGLIDHLITKLLPGWKPSSDYSSSEVTSLNGGGSSTLVDGQTQTSLWDSILTSDAAALVMYQDDVLGPITDDQNSEVTHEEGCLPADTVNNATFHGECNSPPTLADLEYQYSQGSATSALVAKDSSIKIDNFLDFNGSSKSLSWSLSELDHGDTYPEACKLQRTLDNSFMKNEMIPPFNGTYNAFSLTSSCSSLSLAEENADSELKLEIDAIKAFYREQFQELSRRKLAHLDLIRKRWMAKKKLTVH 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele41g1164 660 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 365 421 IPR024678 GO:0004674|GO:0005524
Lele41g1164 660 Pfam Protein kinase domain 40 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele41g1164 660 Gene3D Phosphorylase Kinase; domain 1 21 118 - -
Lele41g1164 660 MobiDBLite consensus disorder prediction 1 25 - -
Lele41g1164 660 SMART serkin_6 37 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele41g1164 660 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 13 640 - -
Lele41g1164 660 SUPERFAMILY Protein kinase-like (PK-like) 31 295 IPR011009 -
Lele41g1164 660 ProSitePatterns Serine/Threonine protein kinases active-site signature. 161 173 IPR008271 GO:0004672|GO:0006468
Lele41g1164 660 Gene3D Transferase(Phosphotransferase) domain 1 120 287 - -
Lele41g1164 660 FunFam Probable serine/threonine-protein kinase WNK1 22 118 - -
Lele41g1164 660 CDD STKc_WNK 35 282 - -
Lele41g1164 660 MobiDBLite consensus disorder prediction 288 309 - -
Lele41g1164 660 FunFam probable serine/threonine-protein kinase WNK9 120 287 - -
Lele41g1164 660 Gene3D - 363 440 - -
Lele41g1164 660 ProSiteProfiles Protein kinase domain profile. 37 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele41g1164 Lele-ChrLele41 20664653 20667587 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele41g1164 24 425 MAP Kinase Kinase Kinase AT5G41990 59.620 1.15e-170 497
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Lele41g1164 Pkinase 2.4e-41 CL0016