Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele41g1162 ATGATCCGTTGGTTATTTAGCGTCCGCTAGCTACCTGGTGGAATAGTTGCGAACATGAGGCCGGTTTTTGTTGGGAACTTCGAGTACGATACCCGTCAATCTGAGCTGGAACGCTTGTTTGCTAAGTATGGGAGGATAGAACGTGTTGACATGAAATCGGGCTTGTGTGGCATTCTGAATGACCTGCCGAATTTATGGGGTCTTCTTTCAGCCACCGTGTTGTATTCTGTTGTTCTTGACAGGGAAAATGAAATCCTGATTTGGCTGATGTACTGTTTGGTGAGGGATGACATGCTGATGCCTTCCATTATCACTTGTGTCTCTAATATCAGTACTGTTATTGCAGCTTTTGCGTTTGTGTATTATGAGGATGAGCGTGATGCTGAAGATGCAATTCGGGCATTAGACAATTTTCCATTTGGTCATGACAAGCGAAGGCTGTCTGTAGAGTGGGCTAGAGGTGAACGTGGTCGTCATAGAGATGGGTCCAGAGCAAACCAGAGGCCCACAAAAACATTATTTGTGATCAACTTCGACCCAATTCGCACTAGAGTTCGTGACATAGAAAGACACTTTGAACCATATGGGAAAGTGCTCCATGTTCGGATTCGTCGGAATTTTTCATTTGTGCAGTTTGAAACGCAAGAAGATGCTACTAAAGCTCTCGAGTGTACACACATGAGCAAGATACTGGATAGGGTGGTTTCAGTGGAGTATGCTCTGAGGGATGACGACGAAAGGGGTGACAGATATTATGACAGCCCAAGAAGAGGAGGGGGTTATGGAAGATCCCCCAGTCCAGTTGCTCGTAGGCGACCTAGTCCTGATTATGGTCGTCCACGCAGCCCCATGTATGATAGGTACAATGGACCAGCATGTGACAGACGTAGGAGTCCTGATTATGGCAGGCCAAGGAGCCCTGATTATGCCGCTCTCCAATCGGAAGGTCCAGGACTTGAAAATTGTCCGTTTATGTGGAATGAAGCAGGTTCCGGTTGTTCTTAG 1005 0.4667 MIRWLFSVRXLPGGIVANMRPVFVGNFEYDTRQSELERLFAKYGRIERVDMKSGLCGILNDLPNLWGLLSATVLYSVVLDRENEILIWLMYCLVRDDMLMPSIITCVSNISTVIAAFAFVYYEDERDAEDAIRALDNFPFGHDKRRLSVEWARGERGRHRDGSRANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKVLHVRIRRNFSFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDDERGDRYYDSPRRGGGYGRSPSPVARRRPSPDYGRPRSPMYDRYNGPACDRRRSPDYGRPRSPDYAALQSEGPGLENCPFMWNEAGSGCS 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele41g1162 334 CDD RRM2_AtRSp31_like 172 241 - -
Lele41g1162 334 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 173 235 IPR000504 GO:0003723
Lele41g1162 334 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 22 53 IPR000504 GO:0003723
Lele41g1162 334 MobiDBLite consensus disorder prediction 246 323 - -
Lele41g1162 334 Gene3D - 166 251 IPR012677 -
Lele41g1162 334 Gene3D - 16 165 IPR012677 -
Lele41g1162 334 FunFam Serine/arginine-rich splicing factor RS31 163 253 - -
Lele41g1162 334 SUPERFAMILY RNA-binding domain, RBD 116 246 IPR035979 GO:0003676
Lele41g1162 334 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 20 154 IPR000504 GO:0003723
Lele41g1162 334 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 171 301 - -
Lele41g1162 334 SUPERFAMILY RNA-binding domain, RBD 16 52 IPR035979 GO:0003676
Lele41g1162 334 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 171 242 IPR000504 GO:0003723
Lele41g1162 334 SMART rrm1_1 172 238 IPR000504 GO:0003723
Lele41g1162 334 SMART rrm1_1 21 150 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele41g1162 Lele-ChrLele41 20653520 20656476 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele41g1162 116 248 Eukaryotic Initiation Factors Gene Family AT1G49760 25.170 4.43e-07 49.7