Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele41g1159 ATGATGGTAGTAGATGCATTGTCTTCTGCCACTTCTGGTCCTACTTTAGAAGTTATTTCTCATCTTATCGAAGCTATTTGTGAGCTTGTAAACTGTGCTAGTGATGTCCTTGTGAACAAGGATAGTTTTAAGGAACTTGCAGTTTACTTGGAAAGAATTGTACCCATCCTAAAAGAATTGAGGACTAAAAAAGTCAGTGATACTGAGACATTTAACCGCACCATTGACATTTTGAGTCGTGAAATTAGAGAGGCAAAAAATCTGATTCAAGAATGCAGCAAGAGAAGCAAGGTCTATCTCTTATTGAACTGCAGGTCTATCACAAAGCGTTTAAAGAATAGTACAAGTGAGATCAACCGTGCTCTTGGATTTATTCCTCTTGCTACCCAAGATCTTTCTTCTGGAATAATTGAAGAAATTGAAAATCTCTGTGACAATATGCAGAAAGCTGAGTTTAAGGCAGCCATAGCAGAAGAGCATATTTTGGAGAAAATCGAGACAGGGATACATGAAAAGAACATTGACCGCTCTTATGCCAATAATTTGTTGATTCTTATTGCACAAGCTGTTGGCATAACAAATGAGAAGTCAACAATGAAAAAGGAAATGGAAGAATTCAAGAGTGAAGTTGAAAAAACCCGTCTAAGGAAGGACTTGGCCGAAGCTATACAAATGGATCAGATCATTGCTTTGCTTGAAAGTGCTGATGCAGTCTCATCACCAAGGGAAAAAGAACTGAAATACTTCGCCAAACGCAAATCTCTTGGAAGTCAACCCTTAGATCCTCTTCTATCATTTTATTGCCCCATAACTAGGGACGTTATGGTGGATCCTGTTGAAACTTCTTCAGGGCAGACATTTGAGAGAAGTGCCATAGAAAAGTGGTTTGCAGAAGGAAATAAAATGTGTCCTCTGACGATGACTCCTTTAGATACATCAGTTTTGCGACCTAATAAAACCTTGAAACAATCAATAGAAGAATGGAAGGATCGAAATACTATGATTAGTATTGCTTCAATGAAAGAAAAAATCCAGTCGGGAGGGGATGAAGAAATACTGCATTGTCTGGGAACTCTGAAGGGATTGTGTGAAGACAAAGATCAGCACAGAGAATGGATGGTAATGGAGAATTACATACCTGTTCTTGTCCAGGTTCTTGGCTCCAAAAACCGTGATGTGAGGAATGAAGCACTTGTCATCCTTTCCATGTTAGCTAAGGATAGTGATGATGCCAAGGAAAGACTTGCAAATGTTGCTAATGCAATTGAATCAATTGTCCGTACTCTTGGACGTCGTGTGACGGAAAGAAAATTGGCAGCAGCATTACTGTTGGAGTTATCCAAGTATGATAGGTTACGAGAATACATTGGAAAGGTTCAAGGTTGCATACTACTATTGGTGACTATATCTAGCAGTGATGACAACCAAGCTGCCAGGGATGCCGCAGAACTACTGGAGAATCTTTCATACTCTGATCAGAATGTTTTGCAGATGGCAAAGGCAAATTATTTCAAGCATCTGTTGCAGCGCCTTTCCTCAGGACCAGATGATGTAAAATTGCTTATGGCCACAACTCTAGCAGAAATAGAGTTAACCGACCACAATAAAGAGTCTTTATTTGCAGGTGGTGTTCTGGATCCACTTCTTCACCTGATCTCACATGGTGATCCTCGGGTGAGAACCATGGCCATTAGAGCTCTTCGGAACCTATCCAGTTTAAAGAAAAATGGACTGGAAATGATTCGACAAGGAGCAGTGCGCCCATTATTTAGGCTTCTTTTCCAACGTAGCTTACCACCCTCAAGTTTGTGGGAACATGTAGCTGCCATAATCATGCAACTTGCTGAATCAACCATTTCTCAAGATACCCAGACACCAGTTTTATTATTTGAATCCGATTGTGATGTTTTTAACCTCTTTGCCTTAATTAGATTCTCGGGGCCTGAGGTGAAGCGAAACATTATCCAGACCTTTTATGCCTTGTGTCAGTCCACATCAGCTTCATACATCAAGACCAAGCTAATAGAGTGCTCTGCTGTTCAAGAACTGGTTCAGTTTTGTGAGAATGAAAACCTTGATCTACGAGCAAGTACTGTAAAACTGTTATCATGCTTGGTTGCAAGTTGCGATGAGGCAAGCATTCTGGAGAATGTAAACCAAAAGTGTTGTGAGAATTTAGTAAGGATCCTTAGATCTTCTTCGGATGAAGAAGAACTTGCTTCTGCTATGGGCATAATATGCCATCTTCCAGAAATTCCTCAGATCTCTCAATGGCTTCTAGATGATGGCATACTGCCCATCATTTATAAATATATCCAAGAAGGGAAAGACAGAGATCTCCAAAAGAGCAACTTAGTTGAGAATTCTGTGGGTGCCCTACGTCGTTTTACAGTTCCAGCGAACTTGGAGTGGCAAAGAAGTGCGGCAGAAACTGGTATTATAACTGTTTTAGTACAGTTGCTTGAATGTGGAACCACATTGGCAAAACAACGTTCAGCATTGTGTCTTAGTCAATTTTCAAAGAGTTCAGTTGGGTTGAGCAAGCCAATTTCCAAGCACAAGGGATTCTGGTGCTTTTCAGCTCCTGCAGGAATCGGCTGCGTGGTTCATGGAGGAATCTGTTCTGTCAAGTCACCATTTTGCCTCGTAGAGGCCAACGCAGTGGGGCCTCTAACACGGACTCTGTGGGATTCCGATCCTGGAGCTTGTGAGGCTTCTTTGGACGCACTCCTGACTTTGATTGAAGGTGAGAGACTGCAGAGTGGTAGTAAAGTGCTTGACACAGCAAATGCCATACCAGCAATGATAAGATTTCTCAGTTCCTCATCCCCTGGATTGCAGGAAAAATCTCTTAATGCTTTGGAGAGGATTTTTCGGTTAATTGAGTACAAACAAAAGTATGGAGCCTCAGCTCAAATGCCTCTGGTTGACTTAACTCAGCGCGGTAATAGTAGCATGAGATCAATGGCAGCTACAATATTGGCGCATCTAAATGTGCTTCATGATCAGTCTTCTTATTTCTGA 3024 0.4127 MMVVDALSSATSGPTLEVISHLIEAICELVNCASDVLVNKDSFKELAVYLERIVPILKELRTKKVSDTETFNRTIDILSREIREAKNLIQECSKRSKVYLLLNCRSITKRLKNSTSEINRALGFIPLATQDLSSGIIEEIENLCDNMQKAEFKAAIAEEHILEKIETGIHEKNIDRSYANNLLILIAQAVGITNEKSTMKKEMEEFKSEVEKTRLRKDLAEAIQMDQIIALLESADAVSSPREKELKYFAKRKSLGSQPLDPLLSFYCPITRDVMVDPVETSSGQTFERSAIEKWFAEGNKMCPLTMTPLDTSVLRPNKTLKQSIEEWKDRNTMISIASMKEKIQSGGDEEILHCLGTLKGLCEDKDQHREWMVMENYIPVLVQVLGSKNRDVRNEALVILSMLAKDSDDAKERLANVANAIESIVRTLGRRVTERKLAAALLLELSKYDRLREYIGKVQGCILLLVTISSSDDNQAARDAAELLENLSYSDQNVLQMAKANYFKHLLQRLSSGPDDVKLLMATTLAEIELTDHNKESLFAGGVLDPLLHLISHGDPRVRTMAIRALRNLSSLKKNGLEMIRQGAVRPLFRLLFQRSLPPSSLWEHVAAIIMQLAESTISQDTQTPVLLFESDCDVFNLFALIRFSGPEVKRNIIQTFYALCQSTSASYIKTKLIECSAVQELVQFCENENLDLRASTVKLLSCLVASCDEASILENVNQKCCENLVRILRSSSDEEELASAMGIICHLPEIPQISQWLLDDGILPIIYKYIQEGKDRDLQKSNLVENSVGALRRFTVPANLEWQRSAAETGIITVLVQLLECGTTLAKQRSALCLSQFSKSSVGLSKPISKHKGFWCFSAPAGIGCVVHGGICSVKSPFCLVEANAVGPLTRTLWDSDPGACEASLDALLTLIEGERLQSGSKVLDTANAIPAMIRFLSSSSPGLQEKSLNALERIFRLIEYKQKYGASAQMPLVDLTQRGNSSMRSMAATILAHLNVLHDQSSYF 1007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele41g1159 1007 SUPERFAMILY ARM repeat 340 997 IPR016024 -
Lele41g1159 1007 Pfam Armadillo/beta-catenin-like repeat 534 572 IPR000225 GO:0005515
Lele41g1159 1007 Pfam U-box domain 266 332 IPR003613 GO:0004842|GO:0016567
Lele41g1159 1007 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 543 585 IPR000225 GO:0005515
Lele41g1159 1007 Gene3D - 13 130 IPR036537 GO:0007166
Lele41g1159 1007 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 242 339 IPR013083 -
Lele41g1159 1007 Coils Coil 75 95 - -
Lele41g1159 1007 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 17 1007 - -
Lele41g1159 1007 Gene3D - 875 1005 IPR011989 -
Lele41g1159 1007 SUPERFAMILY RING/U-box 257 333 - -
Lele41g1159 1007 Coils Coil 196 223 - -
Lele41g1159 1007 CDD RING-Ubox_PUB 266 307 IPR045210 -
Lele41g1159 1007 SMART Ubox_2 265 328 IPR003613 GO:0004842|GO:0016567
Lele41g1159 1007 Coils Coil 140 160 - -
Lele41g1159 1007 Gene3D - 340 434 IPR011989 -
Lele41g1159 1007 Gene3D - 435 634 IPR011989 -
Lele41g1159 1007 SMART arm_5 408 448 IPR000225 GO:0005515
Lele41g1159 1007 SMART arm_5 449 490 IPR000225 GO:0005515
Lele41g1159 1007 SMART arm_5 919 959 IPR000225 GO:0005515
Lele41g1159 1007 SMART arm_5 667 707 IPR000225 GO:0005515
Lele41g1159 1007 SMART arm_5 532 572 IPR000225 GO:0005515
Lele41g1159 1007 SMART arm_5 366 406 IPR000225 GO:0005515
Lele41g1159 1007 SMART arm_5 875 915 IPR000225 GO:0005515
Lele41g1159 1007 Gene3D - 635 856 IPR011989 -
Lele41g1159 1007 ProSiteProfiles U-box domain profile. 261 335 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele41g1159 Lele-ChrLele41 20633022 20638463 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele41g1159 265 1007 U-box Gene Family AT1G76390 28.928 4.26e-65 233