Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele41g1149 ATGTCAGCTCATTATGAATTCTCTCATTCTGCAGCAGCAGAAACGCACAACACCATCACACCAACTTCTTCATCTTCATCATCATCATCAACAAGAACATCGAGCTTCAGGAACAAGAAGAACAGCAGTACCAAGATAAGGTTCAGTGAGGAGCAAATCAAGTTATTGGAGTCCATTTTCGAGACAGAGTCCAAGCTCGACCACACAAAAAAGTTGCAGCTTGCTTCAGAACTTGGCTTGCAGCCTCGCCAGGTGGCCATATGGTTCCAGAACAGACGAGCTCGATCCAAATCCAAGCATCTCCAACGTTCCTACTCTCTTCTCCAAGCAAATTACGATGCTCTGGCTTCCGAATTCGAGGCCTTCAAGAAGGAGAATCAAGCGTTACTGCTAGTGTTGCAGAAGCTGAAAGATGAAACCTTTTGTTGTAAGAAAGTGAGAGATGAAAATATGAAGCCAAGTCCATCAATGGAAAGAACAGAACAGATAGTTGGGGTTGTTCCAGATGATGATAGGAGCATGAAGGCAGAATATTTTGGGCTTGAAGATGATGAAGAACCCACGATTATGAACTTGGCTGATAAGAATACAGATGATCCCTTGACATCATCACATCAAGAAGTATGGAGAAATCTTGAATCTACTGATGACCTCCTGGCCCAGTGTGACAGTGGTTATCAATGGTGGGACTTTTGGTCATGA 702 0.4359 MSAHYEFSHSAAAETHNTITPTSSSSSSSSTRTSSFRNKKNSSTKIRFSEEQIKLLESIFETESKLDHTKKLQLASELGLQPRQVAIWFQNRRARSKSKHLQRSYSLLQANYDALASEFEAFKKENQALLLVLQKLKDETFCCKKVRDENMKPSPSMERTEQIVGVVPDDDRSMKAEYFGLEDDEEPTIMNLADKNTDDPLTSSHQEVWRNLESTDDLLAQCDSGYQWWDFWS 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele41g1149 233 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 35 193 IPR045224 GO:0003700
Lele41g1149 233 SUPERFAMILY Homeodomain-like 23 99 IPR009057 -
Lele41g1149 233 Pfam Homeobox associated leucine zipper 99 138 IPR003106 GO:0006355|GO:0043565
Lele41g1149 233 Coils Coil 119 139 - -
Lele41g1149 233 CDD homeodomain 44 100 IPR001356 GO:0003677
Lele41g1149 233 Gene3D - 15 98 - -
Lele41g1149 233 Pfam Homeodomain 44 97 IPR001356 GO:0003677
Lele41g1149 233 SMART HOX_1 41 103 IPR001356 GO:0003677
Lele41g1149 233 ProSitePatterns 'Homeobox' domain signature. 74 97 IPR017970 GO:0000981|GO:0006355
Lele41g1149 233 MobiDBLite consensus disorder prediction 11 42 - -
Lele41g1149 233 PRINTS Lambda-repressor HTH signature 79 95 IPR000047 GO:0003677
Lele41g1149 233 PRINTS Lambda-repressor HTH signature 70 79 IPR000047 GO:0003677
Lele41g1149 233 MobiDBLite consensus disorder prediction 1 43 - -
Lele41g1149 233 ProSiteProfiles 'Homeobox' domain profile. 39 99 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele41g1149 Lele-ChrLele41 20552367 20553166 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele41g1149 47 233 Homeobox Transcription Factor Family AT3G61890 44.231 5.12e-45 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lele41g1149 Homeodomain 2.7e-17 CL0123