Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele41g1141 ATGGATGACTTGATCATCCCTCCTTCTTCCTCTTCTTCTCTTCTCTGTCTCCCCCGAGATACCCAACCTTCTCTTCAGCAAAAGCTCCAATTCCTCCTCAACAGTCAACCTGATTGGTGGGTCTACGCCATTTTCTGGCAGATTTCCAACGACGACGTTCATGGCAATCTCCTCCTCTCCTGGGCTGAAGGACATTTCAATGGCACCAAGGACACCTCCCCTCGTCTCTCCAGTTCGACCACCACTACTTCAGCCGCCCCACATTACACAGACCTCCACTCTGACAGAACAAGGCTCATGAACAACATTCACTCTCTCATCAACGATAATTCCCGCAATAGCGCCAACATTTGCAGCGACCTCCACGATACTGAATGGTTCTACGTCATGTCCTTGACTCGCACCTTCTCTGTTGCTTCCTCTGCTTCTCTCCCCGGTAAAGCCTTCGCTTCTGGTTCTCTACTATGGCTCAACGGCGACCACGACCTTCAATTTTGCAACTGTGAGAGAGCCAAGGAAGCTTACTTACACGGGATAGAGACTCTGATCTGCATCCCCACCAATCACGGAGTCATCGAAATGGGCTCCTCCGATCTCATCCCAGAAAACTGGGCTCTCGCGCAGCAAGCTAAGGCTCTGTTTGGGTCTGATCTAATCGCCAAGCAACCAAACAACAACCTGATTCAGTTCTTCGATGATCAGAACATTTCCTTCGCCGATATCGGCATTATCGCCGGCGTGCAAGAAGAAGATGACAATTCGCACGTGCCCGACGGCAATAACAGCTCAAGGAATAATAACGGCAAGCGGAAGGCGGAACAGAGGAATAAGGCGAATTCGGGATTCAAGTTCGGGTATGCGGATTCGGAGCATTCCGATTCTGATTGTAATCCTTCGATAGAGAAAAGGACCCCCAAGAAGAGAGGGAGAAAACCCGGTCTGGGCCGTGAAACGCCTCTGAACCACGTGGAGGCAGAGCGTCAGCGTCGGGAGAAGCTGAACCACCGGTTCTACGCGTTACGCGCGGTGGTTCCGAACGTGTCGAGAATGGACAAGGCATCTCTGTTATCGGACGCCGTGGACTACATCAACGAGCTGAAATCGAAGATCGAGGACCTGGAGTCGCAGATTCAGAAACATACGAGCAACAACGATAACAGCAAGAAAGTGAAAATGGAAATGGCGGACACCAGCACGGCGGACAACCAGAGCACGACAACTTCAACGGTGGAACAAACGACAACTTCGTCGGGAGGGGGAAGCGCGACGGGGATGGAGGTGGAGGTGAGGATGATGGGACCGGAGGCAATGGTGAGGGTCCAATCGGAGAAGACAGACCACCCGGGGGCGAGGCTAATGGGGGCGTTGAGAGACTTGGATCTAGGGGTTCACCATGCGAGCATGTCGTGCGTTAATGAGCTCATGCTGCAAGACGTGCTGGTGAAGATTCCTGAAGATTTGAGAAACGAAGAAGCTCTCAAATCTGCCATTCTCGGGCGTTTGGCTCCCTAG 1512 0.5238 MDDLIIPPSSSSSLLCLPRDTQPSLQQKLQFLLNSQPDWWVYAIFWQISNDDVHGNLLLSWAEGHFNGTKDTSPRLSSSTTTTSAAPHYTDLHSDRTRLMNNIHSLINDNSRNSANICSDLHDTEWFYVMSLTRTFSVASSASLPGKAFASGSLLWLNGDHDLQFCNCERAKEAYLHGIETLICIPTNHGVIEMGSSDLIPENWALAQQAKALFGSDLIAKQPNNNLIQFFDDQNISFADIGIIAGVQEEDDNSHVPDGNNSSRNNNGKRKAEQRNKANSGFKFGYADSEHSDSDCNPSIEKRTPKKRGRKPGLGRETPLNHVEAERQRREKLNHRFYALRAVVPNVSRMDKASLLSDAVDYINELKSKIEDLESQIQKHTSNNDNSKKVKMEMADTSTADNQSTTTSTVEQTTTSSGGGSATGMEVEVRMMGPEAMVRVQSEKTDHPGARLMGALRDLDLGVHHASMSCVNELMLQDVLVKIPEDLRNEEALKSAILGRLAP 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele41g1141 503 CDD bHLH_AtAIB_like 315 379 - -
Lele41g1141 503 MobiDBLite consensus disorder prediction 311 328 - -
Lele41g1141 503 Gene3D - 315 384 IPR036638 GO:0046983
Lele41g1141 503 PANTHER MYC 21 500 IPR045084 GO:0003700|GO:0006355
Lele41g1141 503 MobiDBLite consensus disorder prediction 288 303 - -
Lele41g1141 503 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 317 366 IPR011598 GO:0046983
Lele41g1141 503 Coils Coil 356 390 - -
Lele41g1141 503 MobiDBLite consensus disorder prediction 396 422 - -
Lele41g1141 503 Pfam Helix-loop-helix DNA-binding domain 321 366 IPR011598 GO:0046983
Lele41g1141 503 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 25 214 IPR025610 -
Lele41g1141 503 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 318 381 IPR036638 GO:0046983
Lele41g1141 503 MobiDBLite consensus disorder prediction 394 423 - -
Lele41g1141 503 MobiDBLite consensus disorder prediction 250 328 - -
Lele41g1141 503 SMART finulus 323 372 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele41g1141 Lele-ChrLele41 20474483 20475994 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele41g1141 25 502 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00870 35.625 9.09e-77 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele41g1141 bHLH-MYC_N 1.2e-49 CL0161