Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele41g1125 ATGTCTCATCCAAGGCAATTCCAGATGGTGGGTGGTGCTAATAATCCTCCTGGGCATTACAATGACACAACTTTTACTAAAATCTTTGTTGGTGGATTGGCTTGGGAGACTCAAAGGGACACAATGAGGAGATATTTTGAGCAGTTTGGTGAGATCCTTGAGGCTGTTGTTATTACAGACAAGAACACAGGGAGATCCAAGGGTTATGGCTTTGTTACATTTAAGGATCCAGAAGCAGTCATGAGAGCATGTCAGAATCCATCTCCGGTTATTGATGGGAGAAGAGCAAACTGCAATCTTGCATCTCTTGGAGCAAACAAGAATCGCCCACCAACAACTCAACATGGAACAGGAAGGTTCAGACCAGGACCTGGACTGGTGGCTACACCTGCAGCTGCATACCATGGCTCTTCTTCTTCTACATTTTTCCATCAGCCCTCTGGCCAATATACATTTCCTTATTCAACTTATGGGTATTCTGGATATTCACATGACACTATGTATCCCATGAACTATTATAATGTGTACGGAGGTCAACAGTTTTCACCATATTACCCTTCAAGTGGGGCATCTGGGCCACCAGGACTGGTCCATAATATATACCCTTTCTATGCTCAATATGCTCAGACTAGTAGCCAAGCTCAAGGTTTTGGACTACAATATCCTCATCAAATGCTACAATTCCCATTTCTGCCTCATCAGCAGCACTATGGCTCCACAGGGATCCTCTCTTTTCCTCCTTCTTCAATGCCATTGTCAACTACTACAACTAGTGCAGTTGCAACAACAGCTACCACAACTGCAGCAGCAACAGGGACAACAACAACAGTAACGGCAGCAACAACTGGGGCAGGTGGTTCTTCACAAGCTTCTGGAACAGCTTCTGAACAAAAATCTTCAACTTAG 906 0.4437 MSHPRQFQMVGGANNPPGHYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAVMRACQNPSPVIDGRRANCNLASLGANKNRPPTTQHGTGRFRPGPGLVATPAAAYHGSSSSTFFHQPSGQYTFPYSTYGYSGYSHDTMYPMNYYNVYGGQQFSPYYPSSGASGPPGLVHNIYPFYAQYAQTSSQAQGFGLQYPHQMLQFPFLPHQQHYGSTGILSFPPSSMPLSTTTTSAVATTATTTAAATGTTTTVTAATTGAGGSSQASGTASEQKSST 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele41g1125 301 MobiDBLite consensus disorder prediction 103 122 - -
Lele41g1125 301 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 26 103 IPR000504 GO:0003723
Lele41g1125 301 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 85 IPR000504 GO:0003723
Lele41g1125 301 Gene3D - 3 119 IPR012677 -
Lele41g1125 301 CDD RRM_RBM24_RBM38_like 26 101 - -
Lele41g1125 301 MobiDBLite consensus disorder prediction 271 301 - -
Lele41g1125 301 PANTHER BOULE-RELATED 18 265 IPR037366 -
Lele41g1125 301 FunFam RNA-binding protein 24-B isoform X1 13 119 - -
Lele41g1125 301 SUPERFAMILY RNA-binding domain, RBD 17 125 IPR035979 GO:0003676
Lele41g1125 301 SMART rrm1_1 27 99 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele41g1125 Lele-ChrLele41 20336599 20338541 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele41g1125 22 102 C2H2 Transcription Factor Family AT2G19380 43.210 1.57e-15 75.1