Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele41g1108 ATGGAATTGCTGATGCAAGATGTCAAAATGCATTCTGACGATAAAGAGGAAGACGAGGAGGAGGAGGAGGACGAAGAAGAAGCAGAGATAGTTAGAGGGGAAACTAGCAACTGTAAGAATTACCTTTCTTTCTCACCAAATTACGCAACTAGTACTCGTCTTCTTCTTCATAATCATCATGATCCTCATCAAAATTCATGGCTGGGTCTTCATGATCGTCATCACTCTCCACCAGATGCTGCTACAGCCATCGAATCTCTCAATTCCTCGCCTCGATTAGGGTTAGCATCAGCACCGACCGCCAATTTCGCCCGTAATCACAGAAAGTCGGACCTCATGGACTTGTCGCTCGGAGGAATTGGAACCGGCAAAGACGATGAGGAACAAGAAGGAGCCAATTTCCATGGAGGAGGAAGCAGCAGTAACGATGTTGGTGCTGCTATTGAGAAAGAGCACATGTTCGAGAAAATCGTCACTCCCAGTGACGTAGGCAAGCTCAACCGCCTCGTAATACCAAAGCAACACGCAGAGAAGTACTTCCCTCTCGATTCCTCCTCCAACGAGAAAGGGCTGCTCCTGAATTTCGAGGACCGGAACGGCAAGCTATGGCGGTTCCGCTACTCTTACTGGAATAGTAGCCAGAGCTATGTGATGACCAAAGGTTGGAGCCGCTTCGTCAAGGAGAAGAAGCTCGACGCCGGAGACGTTGTCTCTTTCCACCGCGGCGCCGGAGAGTCCTATCAGCACCTGTTGTACATAGATTGGAGGCGAAGACCTGATCACGGCCCACCCGGCCCTGATCCCAACTTGATTACACCTTTCTTTCTTCATCATCCCAATCAGGCGACGACTCAATTTTCTCAGTACTCTATCAGATGGGGCGGCCGATTGTTCTCCCTTCCTTCTCCGGCGTTGCCACCGCGACAGCTGAACCATAGTAATATGTTCCCCTTGTATCATCATCAACAGCAACAAGAGCGACCCCATCATCATCATCCATGGCAGTACCAAGTCCATCGTCATCATCATAATGCGATGAATTCAAGATCTGCAGGTTCGGTGTATTCGAACTTGATAGGGCAACAAGAAGTAAGAAATGTTCCAATGATTATAGATTCTGTTCCAGTTGATCATTATCATCATTCTCATCAAAACTATTACCATGGTAAAAATAGTAGTGCTGCTAATAATACTACTGCTGGTAAAACAATTAGGCTATTTGGGGTGAACATGGAGTGTGCTTCATCGTCTTCTTCTTCTTCATCACCACCAGTGGAAGAATCGAGGTGTTGTAATCTGACAGTAATGGCTAATCCATCAATTTCATCTTCGTCTTCTATCATCCCACCGCCTCTTCATCAGTATCTGAGAGTACCCCATGATGAGGATCAGCATCCAATTTCTTCGTCGTCACCGTCACCGTTATCATCATCAGCAAGATTTCAGAGTCATCATCAGAAAGGGGAAACTTCGACGATGCTTTTTGATTTGGATCCCTCTTTGCATTACAGGCAGTGA 1518 0.4671 MELLMQDVKMHSDDKEEDEEEEEDEEEAEIVRGETSNCKNYLSFSPNYATSTRLLLHNHHDPHQNSWLGLHDRHHSPPDAATAIESLNSSPRLGLASAPTANFARNHRKSDLMDLSLGGIGTGKDDEEQEGANFHGGGSSSNDVGAAIEKEHMFEKIVTPSDVGKLNRLVIPKQHAEKYFPLDSSSNEKGLLLNFEDRNGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDVVSFHRGAGESYQHLLYIDWRRRPDHGPPGPDPNLITPFFLHHPNQATTQFSQYSIRWGGRLFSLPSPALPPRQLNHSNMFPLYHHQQQQERPHHHHPWQYQVHRHHHNAMNSRSAGSVYSNLIGQQEVRNVPMIIDSVPVDHYHHSHQNYYHGKNSSAANNTTAGKTIRLFGVNMECASSSSSSSSPPVEESRCCNLTVMANPSISSSSSIIPPPLHQYLRVPHDEDQHPISSSSPSPLSSSARFQSHHQKGETSTMLFDLDPSLHYRQ 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele41g1108 505 Pfam B3 DNA binding domain 154 257 IPR003340 GO:0003677
Lele41g1108 505 MobiDBLite consensus disorder prediction 462 505 - -
Lele41g1108 505 Coils Coil 1 28 - -
Lele41g1108 505 MobiDBLite consensus disorder prediction 465 490 - -
Lele41g1108 505 MobiDBLite consensus disorder prediction 1 32 - -
Lele41g1108 505 CDD B3_DNA 152 241 IPR003340 GO:0003677
Lele41g1108 505 FunFam B3 domain-containing protein 147 264 - -
Lele41g1108 505 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 61 423 IPR044800 GO:0003700
Lele41g1108 505 ProSiteProfiles B3 DNA-binding domain profile. 154 256 IPR003340 GO:0003677
Lele41g1108 505 SMART B3_2 154 259 IPR003340 GO:0003677
Lele41g1108 505 Gene3D - 147 262 IPR015300 -
Lele41g1108 505 SUPERFAMILY DNA-binding pseudobarrel domain 151 257 IPR015300 -
Lele41g1108 505 MobiDBLite consensus disorder prediction 14 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele41g1108 Lele-ChrLele41 20197063 20198580 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele41g1108 112 416 RAV Transcription Factor Family AT2G46870 46.326 2.68e-70 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lele41g1108 B3 3e-28 CL0405