Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele41g1099 ATGTGGAATCCTCTGTCATGGGTTATGGAAGCAGCAGCAATTATGGCAATTGTTCTTGCTAAGGGGGGATTAAGTCTCACTGGAGAATCTCTTCCCGTCACCAAGAACGGTTATGAAGTCTTTTCTGGTTCAACTTGTAAGTTTGGTGAGATAGAAGCTGTAGTGATTGCCACTGGAGTTCACACATTTTTTGGAAAGGCAGCGCACTTGGTTGACAGTACTGAAGTTGTTGGGCATTTTCAAGCAGTGTTATCTGTAACACTTGCAAATGGATCTCATAGACTTTCACAGCAGGTCTTTGACAGAAAAAAGGACAGAGATAAGGTTGTTCTACTAGCAGCCAGAGCAGTTAGACTTGATAACCAGGATTCCATTGATGCTGCCATTATTAATATGTTATCTGATCCGAAGGAGACACGTGCAAACATAACTGAAGTTCATTTTCTACCTTTCAACCCACTTGATAAACGTACTGCAATTACATATATTGATTCTGAAGGCAACGAGTATAGAGCCAGCAAAGGAGCTCCTGAACAGATTCTAAGTATGTACCAAGAGAAAGATGAGATTGCTGGGAAAGTGCATGCAATCATTGACAAGTTTGCTGAAAGGGGCCTGCGATCTCTTGCTGTTTCTTATCAGGAAGTTCCTGAAAAATCTAAGCATAGTCCTGGAGGTCCTTGGAACTTCTGCCGAAGACTAGGTATGGGGACCAACATGTACCCTACTTCATCATTGTTGGGTCGTCACAAAGATGAAAATGATGCTCTCCCAGTAGATGAGCTGATCGAAAAGGAAGATGGCTTTGCCGGTGTTTTTCCAGAACACAAGTATGAAATTGTGAAAATCTTACAAGAAAAGAAGCATATCGTTGGAATGACAGGAGATGGTGTAAATGATGCGCCGTCTTTAAAGAAAGCAGATATCGGAATTGCTGTGTCAGATGCCACAGATGCTGCAACAAGTGCTGCTGATCTAGTCTTAACTGAGCCAGGCTTAAGTGTGATTATATATGCAGTTTCTATAACCATAAGGATAGTGCTTGGTTTTGTGCTCCTGGCATTGATCTGGGAGTACGATTTTCCACCTTTCATGGTTCTGATCATAGCAATACTGAATGATGGAACTATCACGACCATATCCAAAGACAGGGTAAAACCATCTCCAACACTAGACAGTTGGAAGTTGCCTGATATTTTTGCAACTGGAATTGTCATTGGCACTTATCTTGCTTTGATTACTGTCCTATTCTACTGGACTGCTTTTACCTCGAAGAAAGACTACAGGAAGGAAGATAGAGCCGCCAAATGGATTCTTTTTCAGAGAAGCCTACAAGGATGGAACTCCATAAACTTGCGGGTCAATACAAGGAGATCTTCTTTAATGGAAGAACAGGCCGAACAAAGAGCTGAAATTGGCAGGCTGGGAGAATTACATACTCTGAGGGGATATGTGGAGTCTGTTTTGAGACTAAAAAATTTAGAACCAGAGTGTTATCCAATCTGCTTACACAGTTTAAAGGCAGCATATGAATCCTGA 1539 0.4172 MWNPLSWVMEAAAIMAIVLAKGGLSLTGESLPVTKNGYEVFSGSTCKFGEIEAVVIATGVHTFFGKAAHLVDSTEVVGHFQAVLSVTLANGSHRLSQQVFDRKKDRDKVVLLAARAVRLDNQDSIDAAIINMLSDPKETRANITEVHFLPFNPLDKRTAITYIDSEGNEYRASKGAPEQILSMYQEKDEIAGKVHAIIDKFAERGLRSLAVSYQEVPEKSKHSPGGPWNFCRRLGMGTNMYPTSSLLGRHKDENDALPVDELIEKEDGFAGVFPEHKYEIVKILQEKKHIVGMTGDGVNDAPSLKKADIGIAVSDATDAATSAADLVLTEPGLSVIIYAVSITIRIVLGFVLLALIWEYDFPPFMVLIIAILNDGTITTISKDRVKPSPTLDSWKLPDIFATGIVIGTYLALITVLFYWTAFTSKKDYRKEDRAAKWILFQRSLQGWNSINLRVNTRRSSLMEEQAEQRAEIGRLGELHTLRGYVESVLRLKNLEPECYPICLHSLKAAYES 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele41g1099 512 Gene3D - 457 499 - -
Lele41g1099 512 SUPERFAMILY Calcium ATPase, transmembrane domain M 334 424 IPR023298 -
Lele41g1099 512 Pfam haloacid dehalogenase-like hydrolase 261 308 - -
Lele41g1099 512 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 268 341 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele41g1099 512 Gene3D - 92 232 IPR023299 GO:0000166
Lele41g1099 512 PANTHER CALCIUM-TRANSPORTING ATPASE 25 85 - -
Lele41g1099 512 SUPERFAMILY HAD-like 242 340 IPR036412 -
Lele41g1099 512 Gene3D - 23 75 - -
Lele41g1099 512 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 120 220 IPR023299 GO:0000166
Lele41g1099 512 FunFam Plasma membrane ATPase 94 236 - -
Lele41g1099 512 Pfam E1-E2 ATPase 25 82 - -
Lele41g1099 512 Gene3D - 244 338 IPR023214 -
Lele41g1099 512 FunFam Plasma membrane ATPase 226 342 - -
Lele41g1099 512 PRINTS P-type cation-transporting ATPase superfamily signature 22 36 - -
Lele41g1099 512 PRINTS P-type cation-transporting ATPase superfamily signature 317 329 - -
Lele41g1099 512 SUPERFAMILY Calcium ATPase, transduction domain A 25 71 IPR008250 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele41g1099 Lele-ChrLele41 20121940 20127556 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele41g1099 420 495 Primary Pumps ATPases AT1G17260 42.105 3.44e-09 57.8