Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele41g1095 ATGGCAAAGAAAGTCAATGATTTATGTGGTATCAAGGAGTCTGATACTGGTTTAGCTGCACCAAGTCAGTGGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAGGTGGTGGCCAGATGCACAAAGATAATAAATCCAAATTCTGAAGATGCCAAATATGTTATCAATGTTAAGCAGATTGCAAAGTTTGTTGTTGGGCTGGGTGACAAAGTCTCCCCCACTGACATAGAGGAAGGAATGCGGGTTGGGGTTGATAGAAATAAATATCAGATTCAGATTCCTTTGCCTCCAAAAATTGATCCAAGTGTTACCATGATGACAGTGGAAGAGAAGCCAGATGTGACATATAATGATGTTGGTGGCTGTAAGGAGCAGATTGAAAAGATGCGAGAAGTGGTTGAACTTCCTATGCTTCATCCTGAGAAATTTGTCAAGCTTGGAATTGATCCTCCAAAGGGTGTTCTCTGCTATGGGCCACCAGGAACTGGCAAAACGCTTTTGGCCAGGGCTGTGGCTAATAGAACTGATGCCTGTTTCATTAGGGTCATTGGGAGTGAGCTAGTTCAGAAATATGTTGGTGAGGGAGCTCGGATGGTGCGGGAACTATTTCAGATGGCCCGGTCAAAGAAGGCATGTATTGTGTTTTTTGATGAAGTCGATGCAATTGGAGGTGCCCGTTTTGATGATGGTGTTGGTGGGGACAATGAGGTTCAGCGCACAATGCTTGAAATTGTGAATCAGCTCGATGGGTTTGATGCTCGTGGAAACATCAAAGTCTTGATGGCAACAAACAGGCCTGACACGCTAGATCCTGCCCTACTTCGACCTGGGCGATTGGATCGCAAGGTTGAGTTTGGTCTCCCTGATTTAGAGAGCAGGACTCAGATATTCAAGATCCACACCAGAACCATGAACTGTGAGAGGGATATCCGATTTGAACTTCTCGCTCGCCTTTGCCCAAATTCCACTGGAGCTGATATAAGGAGTGTATGCACTGAAGCTGGCATGTATGCTATCCGCGCCCGAAGGAAGACGGTAACGGAGAAGGACTTCCTCGATGCAGTGAATAAAGTCATTAAAGGGTACCAAAAGTTCAGTGCAACTCCTAAGTACATGGTCTACAACTAA 1143 0.4541 MAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVVARCTKIINPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMYAIRARRKTVTEKDFLDAVNKVIKGYQKFSATPKYMVYN 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele41g1095 380 FunFam 26S protease regulatory subunit 7 1 111 - -
Lele41g1095 380 Pfam AAA+ lid domain 314 357 IPR041569 -
Lele41g1095 380 TIGRFAM 26Sp45: 26S proteasome subunit P45 family 37 363 IPR005937 GO:0005737|GO:0030163|GO:0036402
Lele41g1095 380 FunFam 26S protease regulatory subunit 7 112 291 - -
Lele41g1095 380 SMART AAA_5 155 294 IPR003593 -
Lele41g1095 380 Pfam ATPase family associated with various cellular activities (AAA) 159 291 IPR003959 GO:0005524|GO:0016887
Lele41g1095 380 Gene3D - 293 375 - -
Lele41g1095 380 FunFam 26S protease regulatory subunit 7 293 364 - -
Lele41g1095 380 ProSitePatterns AAA-protein family signature. 262 280 IPR003960 GO:0005524|GO:0016887
Lele41g1095 380 Gene3D - 112 291 IPR027417 -
Lele41g1095 380 Gene3D - 21 111 IPR012340 -
Lele41g1095 380 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 11 366 - -
Lele41g1095 380 CDD AAA 125 292 - -
Lele41g1095 380 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 117 370 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele41g1095 Lele-ChrLele41 20061247 20064003 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele41g1095 124 345 Calmodulin-binding Proteins AT3G56690 37.220 5.24e-42 155