Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele41g1086 ATGGATTACTTCAAGAGTTACGGTAAGGTAGATGAACTCGAGAACAAAGCCTTTCGGAAGAAGACACGTAAGCGCATGATCATCCTCATCGTCTCCTCCATAGTTCTAGGGATAGTGATCGTCGCCGGCGTTGCCGGAACCCTCCTCCACACGCATGATACCTCCTCTTCCTCTAACTCGGTTCCTTCCTCTCCTGAGTTAACTCCGGCCGCTTCACTCAAAGCCGTCTGCGACGTGACTCGCTACCCCAACTCGTGCGTCTCCAGAATCTCCTCCCTCCCGAGCTACTCCAACACCACCGACCCTGAAATCCTCTTCAAGTTCTCTCTCCGCGTCGCCATTGACGAGCTCTCGAAGCTCGCTGGCTACCCAGCGAAGCTCAGAAGCAATGTCAAGGACCACAGTGTACAGACGGCCCTCAATGTCTGCGTAAATGTTCTTGAAGATGCGGTGGATCGGCTCAACGACTCGATTTCATCGCTGGAAGTCGGAGGAGGAGAGAAGATTCTAACGCCGGGGAAGATTGCCGACATTAGGACGTGGCTGAGCGCCACGATTACGGACCAGGAGACTTGTTTGGACGCGATTGAGGAATTGAATCCCACCGCTGCGGAAGAGATTCTTCGTGATATGAGAACCGCCATGGAGAATTCTACAGAATCTGCGAGTAACAGCTTGGCCATTGTCACGAAGATTCTTCGTGTGCTTGCCAAGGTCAACCTCCCGCTCCATCGGAGGCTACTAGGGTCGGGTTTCCCCGAGTGGGTTGGCCCGACAGAGCGGAGGCTACTGCAGCAAGATACGAATAAGACGACGCCCGATGCAGTGGTGGCGAAGGACGGAACTGGACAGTACCGGACGATCAATGAGGCGTTGGCGGCCGTGAAGAAGAAAAGTGAGAGTAGATTCGTGATTTACGCGAAGGAAGGTGTTTACGTAGAAAACGTAGAATTGAAGAAAGACAAATGGAATGTGATGATTATCGGAGACGGGAAAAACAAAACCATCATCACTGGCAGCCGCAATAAAATCGACGGCACACGTACATTTGACACTGCCACTTTTGCTGTAAGCGGGAAGGGATTCATTGCCAAAGACATTGGATTCGTCAACAGTGCAGGTCCGGCCAAACACCAAGCAGTGGCGGTGCGATCAGGCTCTGACCAGTCGGTATTCTACCGGTGCTCCTTCGAAGGCTTCCAGGACACTCTATACGCGCATTCTAACCGTCAGTTCTATCGTAACTGTGACATCACCGGCACCGTCGACTTCATCTTCGGCAACGCTGCAGCAGTCTTCCAGAACTGTGCCATCAAACCCAGACAGCCTCTTCCAGGCCAGTTCAACACCGTCACAGCTCAGGGCAAGAATGATCCAAATCAGAACACTGGGATCGTAATCCAGAACTCTTCAATTTCTGCTCTTGATAATCTCACTGCTTCCACATACCTTGGAAGGCCTTGGAAAAATTACTCCACCACCGTGATCTTGAAGTCTAAAATTGGGCCTTTGTTGGACCCATTGGGCTGGGCTGAATGGACCACTGACGTGGAGCCTCCAGTCACTATATTTTATGCAGAGTACCAGAATACTGGGCCAGGCTCAAATGTGACCCAGAGGGTTCAATGGCCCGGTTATAAGCCCCACCTCTCGGAAGATGAGGCGAGGAAGTTCACGGTTGAGTCATTCATCCAGGCTAGTCAGTGGCTGCCTGATACACAAGTGGAATTTCAGTCCTCGTTATAA 1746 0.5172 MDYFKSYGKVDELENKAFRKKTRKRMIILIVSSIVLGIVIVAGVAGTLLHTHDTSSSSNSVPSSPELTPAASLKAVCDVTRYPNSCVSRISSLPSYSNTTDPEILFKFSLRVAIDELSKLAGYPAKLRSNVKDHSVQTALNVCVNVLEDAVDRLNDSISSLEVGGGEKILTPGKIADIRTWLSATITDQETCLDAIEELNPTAAEEILRDMRTAMENSTESASNSLAIVTKILRVLAKVNLPLHRRLLGSGFPEWVGPTERRLLQQDTNKTTPDAVVAKDGTGQYRTINEALAAVKKKSESRFVIYAKEGVYVENVELKKDKWNVMIIGDGKNKTIITGSRNKIDGTRTFDTATFAVSGKGFIAKDIGFVNSAGPAKHQAVAVRSGSDQSVFYRCSFEGFQDTLYAHSNRQFYRNCDITGTVDFIFGNAAAVFQNCAIKPRQPLPGQFNTVTAQGKNDPNQNTGIVIQNSSISALDNLTASTYLGRPWKNYSTTVILKSKIGPLLDPLGWAEWTTDVEPPVTIFYAEYQNTGPGSNVTQRVQWPGYKPHLSEDEARKFTVESFIQASQWLPDTQVEFQSSL 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele41g1086 581 SMART PMEI_2 68 228 IPR006501 GO:0004857
Lele41g1086 581 FunFam Pectinesterase 69 233 - -
Lele41g1086 581 Gene3D - 268 581 IPR012334 -
Lele41g1086 581 Gene3D Invertase/pectin methylesterase inhibitor family protein 71 232 IPR035513 -
Lele41g1086 581 Pfam Pectinesterase 274 566 IPR000070 GO:0030599|GO:0042545
Lele41g1086 581 FunFam Pectinesterase 268 581 - -
Lele41g1086 581 CDD PMEI-like_3 75 234 - -
Lele41g1086 581 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 73 233 IPR035513 -
Lele41g1086 581 TIGRFAM PME_inhib: pectinesterase inhibitor domain 60 232 IPR006501 GO:0004857
Lele41g1086 581 PANTHER PECTINESTERASE 34 573 - -
Lele41g1086 581 Pfam Plant invertase/pectin methylesterase inhibitor 73 228 IPR006501 GO:0004857
Lele41g1086 581 SUPERFAMILY Pectin lyase-like 272 577 IPR011050 -
Lele41g1086 581 ProSitePatterns Pectinesterase signature 2. 418 427 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele41g1086 Lele-ChrLele41 20025208 20027048 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele41g1086 4 575 Carbohydrate Esterase AT1G53840 56.410 0.0 653