Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele41g1061 ATGGTTAATTCTTCCATGGATATTGTGTCCTCCTACTCCTCAATCTCAGCCCCAAATTCACGTCGCTATTACCCATCTCCTGCAAGCTCTCGTAATGTCTCTTTCTCCTCCACAGCCTATACCTCTCACCCCGACGTAAGAACTCCTCCAGCATCACCCTTTTATTCAGACCAAGCACATTCTTGGAGGGAAGAAATTTCGTGGCAGATTGAGCCCAATGAGCGACTCAACTACCCTAAAACCCTAGGCTCTGCTCTGAGTCCGTGGACACCTTCTGATCTCAGTCAGACATTTCGTCGAGCAGCTAACGACCATCACCTCCATCGAGCATACGAAAATGGGAAAGTCGAGCTTCGGAGCTTCGATGCAAGTGAGTGTGAAATTGAGAAGAGAAGTGCATTAGGAGAAGAAGATGAGGCGAGTATGATGGGGTATAACAGTGAAGTGTTGTATGGAAGTTATTACAGTGAGAGGGATTGCGATGAGAAGGAGAAGGGGAAGGAATCAGGAAGAAGAAGAAGAAGAAGAGTTGGAGTGATAGGGTTGTTTAGGTACACAACGAAGTGGGATATGGTGATAGTGATGGTGGGGTGTGTTGGGGCGATCATCAATGGTGGATCACTGCCTTGCTATTCATATCTGTTTGGTGAGTTGGTCACTAAGATTGCTACTGAAGCATTCGCTGGTCAACAAACACAGATCCTTAAGGACGTTCAACAGGTGTGCATATATATGGTGGGTTTAGCTGCAGTGGTGTTAGGAGGAGCATGTCTAGAGATCACATGTTGGAGGTTGGTGGGAGAAAGATCTGCTCAGAGAATAAGAAGTGAGTACTTGAAAGCAGTTCTTAGGCAAGACATTGCCACTTTTGACACAGAGATGAGCACTGGTGATATCATGCATGGAATTGCAAGTGATGTTGCTCAAATTCAAGACGTCATGGGAGACAAGATGGCTCACTTCATTCATCACGTGTTTACATTCATTTGTGGGTACACAGTTGGGTTTCTAAGGTCATGGAAGGTTTCTATTGTGGTTCTCTCAGTCACCCCTCTCACTCTTTTATGTGGCATAGCATACAAAGCTGTTTATGGAGGTCTTACAGCAACAGAGGAAGCTTCATATAGGAAAGCAGGGAGCATAGCAGAGCAGGCCATAAGATCAATGAGGACAGTGTTTGCTTTTGTTGCAGAAAGCCAAATGGCTTCAAAATACAGACAAGCACTGCACAAATCAGAGGCATTTGGGGTAAAGATAGGGTTTGCAAAAGGTGGAGGCATGGGATTAATCTATCTCATAACCTACTCGACATGGGCATTGGCTTTTTGGTATGGTTCCCTCTTAAATGCCAGAAATGAGATTGATGGTGGGGCAGCCATTTCTTGTTTCTTTGGTGTTAATATTGGAGGAAGAGGCTTGGCATTGGCACTTTCATATTTTGCACAATTTGCGCAAGGCACTGTTGCAGCAAGTCGTGTATTTGAAATGATAGAGAGAATTCCTGAGATTGATCCATACCGCTCTGAAGGAAAGAAGCTTTCAAATGTTAATGGAATAATTGAGTTCAAGAATGTCAGCTTTTCATACCCATCTCGTCCTGATGCTCTCATTCTTCAATCCCTTAACTTAGTTGTTTCTTCTGCAAAAACCCTAGCCTTGGTTGGCCCCAGTGGAGGAGGAAAGTCCACCGTCTTCGCTCTCATAGAGAGGTTTTATGATCCCATTGAAGGGGTAATAACCTTGGATGGTCATGATTTGAGAACCTTTCAAGTTAAATGGCTAAGAGATCAAATTGGAATGGTAGGTCAGGAGCCAATTCTTTTTGCCACAACCATACTTGAAAATGTGATGATGGGTAATGAAAATGCCGCTAAAGAAGATGCAATTAATGCTTGCATTGCTGCTGATGCCCACAGCTTTATCTCTAGCCTACCACTAGGCTATTACACTCAGGTTGGAGACAGGGGAACCCAACTCTCAGGAGGTCAAAAGCAGCGAATCGCATTGGCTCGAGCTATGATGAAGAATCCTAAACTCCTTCTCTTAGATGAACCTACCAGTGCTCTTGATGCTGAGTCAGAGTCAATAGTCCAAAAGGCCATTGACAATATTTCTGCTGGCAGAACCACCATTGTCATTGCTCACAGGATAGCAACAGTAAGGAACGCTCACACCATTGTAGTTCTTGAACGTGGTTCTGTGACTGAGATTGGTAACCATTACCAGCTTATGAGAAAAGCTGGAACATATTATAACCTCATCATGCTTGCTTCTGAAGAATCTGATCCCATCTCAAAACCTAGGCCGCCTGAAGAGTATGTCACACAAAAGGCTAATGACTTTTCCATCTATGAGAAACCATCTCCTGATATCTCAAGGTTCACCTCTAAGTACTTGATATCCATGGATGAAGAACTAGAAGATATGGATCATACACAAAAGAAGAAGCCAAGAAAATTCAGACTCTATGAGATATGGAAACTGCAAAAGCCAGAGCTTGTGATACTATTGTTGGGATTCCTTCTAGGTATGCTTGCAGGTGCTTTCTTGTCCCTCTTTCCCTTGATTTTAGGCATGGCCCTTGAAGCATATTTTCATGAAGACACTGCAAAAGTGAGAAGAGATGTCGGTCGCCTTTGTCTAGCGCTTGTTGGTCTTGGTTTTGGATGCATCATCTCCATGACAGGTCAACAAGGTCTGTGTGGCTGGGCTGGAACAAAACTCACATTAAGGGTTAGAGACCTTCTGTTTCAAGCCATACTAAAACAAGAACCAGGTTGGTTTGATTTCGAAGAAAACTCCACCGGTGTGTTAGTTTCAAGGCTTTCCATTGACTGTGTTAGCTTTCGTTCGGTTCTTGGTGATAGATTTTCAGTCCTTTTAATGGGGTTGAGTTCAGCTGCTGTAGGATTTGGTGTAGCCTTTTCCCTTGAATGGAGATTAGCCCTTTTGGCTGCTGCTTTGTCCCCATTTACTCTTGGTGCTAGCTACTTGAGTTTGATCATAAACATAGGGCCAAAAGTTGATGACAATTCTTATGCCAGAGCTAGTAATATTGCTTCTGGTGCAGTTTCAAACATAAGGACAATCACAACTTTATCTGCCCAAGAACAAATAGTAAAGTCCTTTGAACAAGCCTTGTTAGAGCCCAGGAGAAAATCTATAAAGAAGTCACAAATTCTAGGCCCAACACTTGGGATTTTTCAAGGATCCATGTATGGAGCGTACACATTAATTCTTTGGTTTGGCGCCTACCTTGTGAAACAGAACCAAACAGAATTTGGAGATGTTTATAAGATCTTTCTCATTCTTGTTTTGAGCTCATTTTCTGTGGGGCAACTAGCAGGCTTAGCACCCGATACTTCCATGGCAGCTACAGCAATTCCTGCAGTTCTTGATATCATAGATCGTAGGCCATCGATAGGCAATGATAGAACAAAAAAGGAATCTGACATGATCGCGGTTATGGAAGATGGCACGGTGGTGGAATCTGGAAGCCATGAAACTCTCATGGCTTCTTCCCATGGTGAGGATGAAGGTTTGTACGCTAGCTTTGTTCGTGCTCAGACACAGGCCAATGCCTTTTCTGCTATGTCTGAGGATTTGTAA 3609 0.4353 MVNSSMDIVSSYSSISAPNSRRYYPSPASSRNVSFSSTAYTSHPDVRTPPASPFYSDQAHSWREEISWQIEPNERLNYPKTLGSALSPWTPSDLSQTFRRAANDHHLHRAYENGKVELRSFDASECEIEKRSALGEEDEASMMGYNSEVLYGSYYSERDCDEKEKGKESGRRRRRRVGVIGLFRYTTKWDMVIVMVGCVGAIINGGSLPCYSYLFGELVTKIATEAFAGQQTQILKDVQQVCIYMVGLAAVVLGGACLEITCWRLVGERSAQRIRSEYLKAVLRQDIATFDTEMSTGDIMHGIASDVAQIQDVMGDKMAHFIHHVFTFICGYTVGFLRSWKVSIVVLSVTPLTLLCGIAYKAVYGGLTATEEASYRKAGSIAEQAIRSMRTVFAFVAESQMASKYRQALHKSEAFGVKIGFAKGGGMGLIYLITYSTWALAFWYGSLLNARNEIDGGAAISCFFGVNIGGRGLALALSYFAQFAQGTVAASRVFEMIERIPEIDPYRSEGKKLSNVNGIIEFKNVSFSYPSRPDALILQSLNLVVSSAKTLALVGPSGGGKSTVFALIERFYDPIEGVITLDGHDLRTFQVKWLRDQIGMVGQEPILFATTILENVMMGNENAAKEDAINACIAADAHSFISSLPLGYYTQVGDRGTQLSGGQKQRIALARAMMKNPKLLLLDEPTSALDAESESIVQKAIDNISAGRTTIVIAHRIATVRNAHTIVVLERGSVTEIGNHYQLMRKAGTYYNLIMLASEESDPISKPRPPEEYVTQKANDFSIYEKPSPDISRFTSKYLISMDEELEDMDHTQKKKPRKFRLYEIWKLQKPELVILLLGFLLGMLAGAFLSLFPLILGMALEAYFHEDTAKVRRDVGRLCLALVGLGFGCIISMTGQQGLCGWAGTKLTLRVRDLLFQAILKQEPGWFDFEENSTGVLVSRLSIDCVSFRSVLGDRFSVLLMGLSSAAVGFGVAFSLEWRLALLAAALSPFTLGASYLSLIINIGPKVDDNSYARASNIASGAVSNIRTITTLSAQEQIVKSFEQALLEPRRKSIKKSQILGPTLGIFQGSMYGAYTLILWFGAYLVKQNQTEFGDVYKIFLILVLSSFSVGQLAGLAPDTSMAATAIPAVLDIIDRRPSIGNDRTKKESDMIAVMEDGTVVESGSHETLMASSHGEDEGLYASFVRAQTQANAFSAMSEDL 1202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele41g1061 1202 SUPERFAMILY ABC transporter transmembrane region 182 504 IPR036640 GO:0005524|GO:0016020
Lele41g1061 1202 CDD ABC_6TM_Pgp_ABCB1_D2_like 852 1141 - -
Lele41g1061 1202 MobiDBLite consensus disorder prediction 13 45 - -
Lele41g1061 1202 CDD ABC_MTABC3_MDL1_MDL2 520 757 - -
Lele41g1061 1202 MobiDBLite consensus disorder prediction 13 54 - -
Lele41g1061 1202 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 837 1123 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lele41g1061 1202 Gene3D ABC transporter type 1, transmembrane domain 182 1127 IPR036640 GO:0005524|GO:0016020
Lele41g1061 1202 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 520 756 IPR003439 GO:0005524
Lele41g1061 1202 Pfam ABC transporter transmembrane region 836 1107 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lele41g1061 1202 Pfam ABC transporter transmembrane region 195 468 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lele41g1061 1202 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 512 754 IPR027417 -
Lele41g1061 1202 PANTHER ABC TRANSPORTER B FAMILY 158 756 - -
Lele41g1061 1202 FunFam ABC transporter B family member 4 510 762 - -
Lele41g1061 1202 ProSitePatterns ABC transporters family signature. 659 673 IPR017871 GO:0005524|GO:0016887
Lele41g1061 1202 SMART AAA_5 547 733 IPR003593 -
Lele41g1061 1202 Gene3D - 510 758 IPR027417 -
Lele41g1061 1202 FunFam ATP-binding cassette transporter, subfamily B, member 2, group MDR/PGP protein PpABCB2 1010 1150 - -
Lele41g1061 1202 Pfam ABC transporter 538 687 IPR003439 GO:0005524
Lele41g1061 1202 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 196 485 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lele41g1061 1202 CDD ABC_6TM_Pgp_ABCB1_D1_like 196 493 - -
Lele41g1061 1202 Gene3D - 1148 1194 IPR027417 -
Lele41g1061 1202 SUPERFAMILY ABC transporter transmembrane region 816 1139 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele41g1061 Lele-ChrLele41 19829312 19838075 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele41g1061 195 756 Calmodulin-binding Proteins AT2G36910 37.279 1.57e-112 380