Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele41g1056 ATGCAGAATCACAGGCTGAAGCAGCAGCAACAAGCTTTGATGCAGCAAGCTCTTCTTCAGCAACAGTCTCTGTACCACCCTGGCCTACTAGCTCCTCCCCAGATTGAACCAATTCCAAGTGGAAATCTGCCTCCTGGTTTTGATCCAAGTACTTGCCGCAGTGTGTATGTTGGGAATATACATACACAGGTTACTGAACCACTTCTGCAAGAAGTTTTTGCAAGTACTGGCCCAGTTGAAGGTTGTAAACTTATCAGAAAGGAGAAGTCATCCTATGGATTCATTCATTACTTTGATCGAAGATCAGCTGCTCTTGCCATATTATCTCTCAATGGAAGGCACTTATTTGGGCAGCCCATCAAAGTTAACTGGGCATATGCTAGCGGTCAGAGAGAGGATACATCAGGTCATTACAACATATTTGTTGGTGATCTCAGCCCTGAGGTCACTGATGCTACATTGTTTGCTTGTTTTTCTGTTTACCCCAGTTGTTCAGATGCAAGGGTAATGTGGGATCAGAAGACTGGGCGTTCTAGAGGGTTTGGTTTTGTTTCATTTCGTAATCAACAGGATGCTCAAAGCTCAATAAATGATTTGACTGGTAAGTGGCTTGGTAGTAGGCAAATACGCTGCAACTGGGCAACAAAAGGTGCTGGTTCTAATGAAGACAAGCAAAACTCTGACACAAAAAGTGTGGTTGAACTAACAAATGGCTCATCTGAAGATGGTAAAGAGACAACTAACAGTGATGCTCCAGAGAACAATCCTCAATATACTACTGTCTATGCTACCCAGCTTGATCTCCATCGCCACTTCCATGCTCTTGGGGCTGGAGTGATAGAGGAGGTTCGTGTCCAGAGGGATAAAGGATTTGGTTTCGTGAGGTATAGTACCCATGCTGAAGCAGCTCTGGCTATTCAGATGGGAAATGCCCAGTCTATTCTCTGCGGAAAACCAATTAAGTGCTCCTGGGGTAGCAAGCCCACTCCACTGGGAACCGCTTCAAATCCTCTACCCCCACCTGTAGCCGCACCTCTGCCAGGCCTCTCCGCAACTGATCTTCTGGCATACGAGAGACAGTTAGCAATGAGCAAGATGGGTGGGGTACATGCTCTTATGCATCCCCAAGGACAGCACCCCCTTAAACAGGCTGCAATTGGAGGAAGCCAGGCTATATATGATGGTGGGTTTCAGAATGTTGCTGCTGCCCAACAAATGATGTACTACCAGTAA 1233 0.4623 MQNHRLKQQQQALMQQALLQQQSLYHPGLLAPPQIEPIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFASTGPVEGCKLIRKEKSSYGFIHYFDRRSAALAILSLNGRHLFGQPIKVNWAYASGQREDTSGHYNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSSINDLTGKWLGSRQIRCNWATKGAGSNEDKQNSDTKSVVELTNGSSEDGKETTNSDAPENNPQYTTVYATQLDLHRHFHALGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNAQSILCGKPIKCSWGSKPTPLGTASNPLPPPVAAPLPGLSATDLLAYERQLAMSKMGGVHALMHPQGQHPLKQAAIGGSQAIYDGGFQNVAAAQQMMYYQ 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele41g1056 410 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 263 327 IPR000504 GO:0003723
Lele41g1056 410 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 138 216 IPR000504 GO:0003723
Lele41g1056 410 SMART rrm1_1 54 123 IPR000504 GO:0003723
Lele41g1056 410 SMART rrm1_1 260 323 IPR000504 GO:0003723
Lele41g1056 410 SMART rrm1_1 139 212 IPR000504 GO:0003723
Lele41g1056 410 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 53 127 IPR000504 GO:0003723
Lele41g1056 410 Gene3D - 1 134 IPR012677 -
Lele41g1056 410 SUPERFAMILY RNA-binding domain, RBD 248 329 IPR035979 GO:0003676
Lele41g1056 410 Gene3D - 239 331 IPR012677 -
Lele41g1056 410 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 51 330 - -
Lele41g1056 410 CDD RRM1_TIA1_like 55 125 - -
Lele41g1056 410 SUPERFAMILY RNA-binding domain, RBD 37 131 IPR035979 GO:0003676
Lele41g1056 410 MobiDBLite consensus disorder prediction 215 256 - -
Lele41g1056 410 SUPERFAMILY RNA-binding domain, RBD 132 220 IPR035979 GO:0003676
Lele41g1056 410 Gene3D - 135 238 IPR012677 -
Lele41g1056 410 CDD RRM2_PUB1 139 213 - -
Lele41g1056 410 FunFam oligouridylate-binding protein 1B-like isoform X2 1 135 - -
Lele41g1056 410 FunFam oligouridylate-binding protein 1-like isoform X2 136 231 - -
Lele41g1056 410 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 263 317 IPR000504 GO:0003723
Lele41g1056 410 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 55 121 IPR000504 GO:0003723
Lele41g1056 410 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 140 210 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele41g1056 Lele-ChrLele41 19795532 19799950 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele41g1056 48 327 Eukaryotic Initiation Factors Gene Family AT1G49760 27.393 7.38e-23 99.4