Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele41g1035 ATGCCTTGCAGAAGAATTCTCTTGAAAAGCTTCGTTCTTGGCTGTTTCAAGACCAATCATCAATCTTCTTCTTCCTCGTACTCTTCAAATAATAGTAAGGATAAGTGCTTGGCCTCTGGTAAGGTGAGCTCAAGAAGAGTGTGTCTCTCTGATTTGAGCAATTCTTCTTCTCTCTCTATCATGAGCGATCTCTCCAACTCTGTTCTGGGTTCAAATCTTCATATCTTCACCCTCAAGGAGCTGAAGGAGATCACAAACAATTTCTGCAAATCCAGTGTTGTTGGTGAAGGAGGATTTGGGAAGGTTTATAAAGGCTTCATTGATGATAAGCTCAGGACTGGTTTAGAAGCTCAAAGTGTTGCAGTTAAAGTTCTGGACTCAGATAGCAAACAGGGACACAGAGAGTGGTTGGCTGAAGTAATCTTTCTGGGGCAATTGAAGCATCCCCATCTGGTGAACTTGATTGGATATTGCTGTGAAGATGAACACAGACTTCTGGTTTACGAATACATGGAGAGAGGAAATCTAGAGAACAAGCTTTTCAAGGGTTACTTAGCAGCCTTGCCTTGGCTCACAAGAATCAAGATAGCCACTGGCGCCGCGAAAGGACTCGCTTTCCTTCACGAAGAAGACCAACCCGTCATCTACAGAGACGTCAAAGCCTCAAACATCCTATTAGACGCCGATTACAATACCAAGCTCTCTGATTTCGGTCTCGCAATAGACGGCCCAGAAGAAGAAGATCAGATTTATATCACAACTCGAGTTATGGGTACTCATGGTTATGCTGCTCCTGAGTACATAACATCTGGGCATTTGACAACGATGAGCGATGTTTATAGCTTCGGGGTGGTTCTATTGGAACTGATTACAGGGAAGAGATCTGTGGATAAGAACCGTCCGATCAGAGAGAAGGATTTGGTGGAATGGGCAAGGCCATTGTTAAAGGACCCTAACAAGCTTGAAAGAATAATGGACCCAAGATTAGAGGGTCAATATTCTTATGAAGGAGCTAGTAAAATGGCGTCTCTGGCTCACCAATGTCTGAGCCAGAACCCTAAGTCTCGACCCTCCATGCGAGCCGTGGTTAAGACCTTAGAGCCACTCATGAACCTAACTGATATACCGGTCGGCTGCTTTGTCTATGTGGTCCCCAATGAAAATAAACCGGTTCAATGCGGGAATGAATGTGAGCAGAAGAAGGAGGATGAGGTAATGGAGAGGACAAAGACGAAGAAGATGAAGAAGAATCGAAAAGGTCAAAGACGAAGACGGCAGATTAAGATGCTGAGATCATCTGGTTCTGTTCATTCAGATACTGCTCTGTACAAAGTTCTTGGTACTAGCCTTTATTCTTCAAAGCAATAA 1368 0.4393 MPCRRILLKSFVLGCFKTNHQSSSSSYSSNNSKDKCLASGKVSSRRVCLSDLSNSSSLSIMSDLSNSVLGSNLHIFTLKELKEITNNFCKSSVVGEGGFGKVYKGFIDDKLRTGLEAQSVAVKVLDSDSKQGHREWLAEVIFLGQLKHPHLVNLIGYCCEDEHRLLVYEYMERGNLENKLFKGYLAALPWLTRIKIATGAAKGLAFLHEEDQPVIYRDVKASNILLDADYNTKLSDFGLAIDGPEEEDQIYITTRVMGTHGYAAPEYITSGHLTTMSDVYSFGVVLLELITGKRSVDKNRPIREKDLVEWARPLLKDPNKLERIMDPRLEGQYSYEGASKMASLAHQCLSQNPKSRPSMRAVVKTLEPLMNLTDIPVGCFVYVVPNENKPVQCGNECEQKKEDEVMERTKTKKMKKNRKGQRRRRQIKMLRSSGSVHSDTALYKVLGTSLYSSKQ 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele41g1035 455 MobiDBLite consensus disorder prediction 404 436 - -
Lele41g1035 455 Pfam Protein tyrosine and serine/threonine kinase 92 366 IPR001245 GO:0004672|GO:0006468
Lele41g1035 455 MobiDBLite consensus disorder prediction 412 430 - -
Lele41g1035 455 SMART serkin_6 88 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele41g1035 455 CDD STKc_IRAK 94 369 - -
Lele41g1035 455 ProSitePatterns Protein kinases ATP-binding region signature. 94 123 IPR017441 GO:0005524
Lele41g1035 455 FunFam Serine/threonine-protein kinase BIK1 55 170 - -
Lele41g1035 455 PANTHER OS01G0588500 PROTEIN-RELATED 33 369 - -
Lele41g1035 455 Gene3D Phosphorylase Kinase; domain 1 51 170 - -
Lele41g1035 455 SUPERFAMILY Protein kinase-like (PK-like) 63 367 IPR011009 -
Lele41g1035 455 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 171 375 - -
Lele41g1035 455 ProSiteProfiles Protein kinase domain profile. 88 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele41g1035 455 Gene3D Transferase(Phosphotransferase) domain 1 171 375 - -
Lele41g1035 455 ProSitePatterns Serine/Threonine protein kinases active-site signature. 214 226 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele41g1035 Lele-ChrLele41 19628550 19630286 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele41g1035 74 415 Glycoside Hydrolase AT3G07070 46.686 6.15e-98 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lele41g1035 PK_Tyr_Ser-Thr 1.2e-48 CL0016