Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele41g1028 ATGATTACCGACATCCCTCTTTTGTTTCTCTCGAGAACTTTTCATCCTTCATCTCTGCAATACAGCGATATCAGTTTCACCGCTAAACGACGACATCGAGTGCCACCTACGTTTTCTCCATCTCCAGCGAATACTTCTATACGGCGGTATATTATCGGATTCACCAATTTCGGGGAATCGGGATGCTCACGCCGATTTCCGACGATGTCCTCTCACGAACAAGCCCTAGTGTCCCTTTTTTCCCAGCTAGCCTTGTCCTTCGACGGCGCTATTTTGGGTCTCGCCTTGGCCTATGCCGCTGTCCGGTCCGTCCTCAAACTTACTGCTAACTCTGCCGCGCTCGACAAGCTCCGCGTCGCCCCTACTCTCTCTGTTTCTGACCTCCGTTCACTTCTGGATAGTTCCGACGCTGACGGCAATTCACAAGATTGCAACAAACTAGTTATTGTCCGTGGTACTGTCGAGGCTAAGTCTGCCGTTGAGAGCGGCTGGAAAAGCTTAAGACCTAGTGTACTAGTTTCTCGCGAGTCTGGCGATAACGCCGTGGCTATTCAGAGAACTCAAACGTGTATATACACTGAATGGAAGGGCTTCTTTGGTTGGACTTCTGATCTTCGAGCCTTATTTGCTCGAAATTGGAGGCAGCAAGGGTCTACATCTTTAAGAACGGTGCCCTTTGTTCTGATTGATGGTGTATGGCGACCTCATGCTGATTATGTCGTTGTCAACTTGGAAGGCTCAAGACATCCTTTACCTCTTACTACAGTTTATCATAAATTGCAACCCATAAATGCTTCTCCATACACATTCTTGCAGGCACTTTTTGGACATGAGTATCCAGTTGGGCTACTGGATGAAGAGAAAATTCTTCCTTTGGGAAAGGATATCAATGCTGTTGGCATATGCCATTTTAGAAATGGAATTGCTGAAATTAAGTCATGCAAAGAGTTGCCTTATTTTCTGTCTGAATTGAACAAAGATCAGATGATTTTGGATCTTACATTTAAAACAAAGGTACTTTTTTGGAGTGGTATCATTCTGGGTTCAGTGTCAGTTGGCATTCTTGGTTATGCTTTTGTGAGAAACTGGAACAAGTGGAAACAATGGAGGCAACAGAGGCAGTTTCAGCAGCAAGGTCAAGCCAACTATGATAATGCTGCTGAACTCGAGATTTTAGACAATGAGATAGAAGATGTTCCAGATGGACAATTATGTGTTATCTGCCTGATGAGGAGAAGGCGTTCTGTGTTCATTCCCTGTGGGCATCTTGTGTGTTGCCAAGGGTGTGCGATATCCGTTGAACGCGAAGTGGCACCTAAGTGTCCCGTTTGTCGGCAGGAAATTCGCAATTCAGTGCGGATATTTGAATCGTGA 1374 0.4556 MITDIPLLFLSRTFHPSSLQYSDISFTAKRRHRVPPTFSPSPANTSIRRYIIGFTNFGESGCSRRFPTMSSHEQALVSLFSQLALSFDGAILGLALAYAAVRSVLKLTANSAALDKLRVAPTLSVSDLRSLLDSSDADGNSQDCNKLVIVRGTVEAKSAVESGWKSLRPSVLVSRESGDNAVAIQRTQTCIYTEWKGFFGWTSDLRALFARNWRQQGSTSLRTVPFVLIDGVWRPHADYVVVNLEGSRHPLPLTTVYHKLQPINASPYTFLQALFGHEYPVGLLDEEKILPLGKDINAVGICHFRNGIAEIKSCKELPYFLSELNKDQMILDLTFKTKVLFWSGIILGSVSVGILGYAFVRNWNKWKQWRQQRQFQQQGQANYDNAAELEILDNEIEDVPDGQLCVICLMRRRRSVFIPCGHLVCCQGCAISVEREVAPKCPVCRQEIRNSVRIFES 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele41g1028 457 SMART ring_2 405 444 IPR001841 -
Lele41g1028 457 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 380 457 IPR013083 -
Lele41g1028 457 SUPERFAMILY RING/U-box 397 451 - -
Lele41g1028 457 Pfam Zinc finger, C3HC4 type (RING finger) 403 450 - -
Lele41g1028 457 ProSiteProfiles Zinc finger RING-type profile. 405 445 IPR001841 -
Lele41g1028 457 Pfam E3 Ubiquitin ligase 208 354 IPR022170 GO:0004842|GO:0006996|GO:0016567
Lele41g1028 457 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SPL2 69 457 IPR044247 GO:0004842
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele41g1028 Lele-ChrLele41 19584690 19588371 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele41g1028 402 454 C3H Transcription Factor Family AT3G06140 39.623 2.46e-06 47.8