Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele41g1020 ATGTTCATTAGTTTTATTGTGTTAGTTGAGTTCTTCACCGTAACTGTTTTGATCCTTATCTGTAAATCTGCGGTCTTGAAAATACATGCATTGTTTGCTTCAACAATACCTTACCTGCTTTTGGTGCTTCTGCCACACATGGGATTGGCTGATTATGCTTCCATCCTGATCGTAGCAGCACTTATAGCTGCACTTTTATTCTTCAGCCTCACCATGCTTGGTTGGTGTACCTACAGAAGCATTGATGTGATACAATCCATTCCACCTACAATAACAACAAACTCAGCTCTTGATGACAAGTTACAATCCTTCACCACAAGCCTAGAGTCTCATTCCAAGACATTTCAGTTCAGAGCTGCAGAAGCTGTACCAGGAACTGATCAGACTGAATGCGTAATCTGTTTGGCACCCTTTGAAGAAGAAGAGAGCGTGAGGCAGCTTCATAGCTGTAGACACATCTTTCATACGATTTGCATCGACACGTGGCTCGCCTCTCATTCTGGCTGCCCTTTGTGTAGAACCCAGATAGACCTTGTGCCACCTTCTCCAAATGATATTGAGGAAGTGTCCCTTCCAAGAAGGTCTGTGGCTTCAGAGGAAAATGGCCACAATCAGATGATCTTGTTCCTTGTCAGCAGCTCCTGA 645 0.4388 MFISFIVLVEFFTVTVLILICKSAVLKIHALFASTIPYLLLVLLPHMGLADYASILIVAALIAALLFFSLTMLGWCTYRSIDVIQSIPPTITTNSALDDKLQSFTTSLESHSKTFQFRAAEAVPGTDQTECVICLAPFEEEESVRQLHSCRHIFHTICIDTWLASHSGCPLCRTQIDLVPPSPNDIEEVSLPRRSVASEENGHNQMILFLVSSS 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele41g1020 214 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 92 178 IPR013083 -
Lele41g1020 214 SMART ring_2 131 172 IPR001841 -
Lele41g1020 214 Pfam Ring finger domain 130 173 IPR001841 -
Lele41g1020 214 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 53 178 - -
Lele41g1020 214 ProSiteProfiles Zinc finger RING-type profile. 131 173 IPR001841 -
Lele41g1020 214 SUPERFAMILY RING/U-box 130 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele41g1020 Lele-ChrLele41 19507786 19510707 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele41g1020 113 202 C3H Transcription Factor Family AT4G33565 41.489 6.93e-17 76.3