Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele41g1016 ATGAACGCGGCTGCACCGAATCATTCCCTTTGTTCATTACGGAGGGGTTTCTGCTTCATAGCGCTCGCGCTTGGGGGTTCGCTGCCCCTTCGAAATCTCAAGACAGAAATCACTCGTTTTAGCTCTCTGAATCTCGATCACACCGAGAGGACGAAACTACTTACTCATCTCCCTCCTCCGTTCTCTGTCGCTCTTATACTGGCATCAAGATTTCGGGTATTGATCAATCTTCTACAGGTGGTTTTGGAATTGGAAGGTTTATTGAGCGGATCTGATCATAGAGATTCGCAGTTGAGGATGAATTTGCAACAAGTTGGACAGTCTAGATCCTCTAATGGATATGGCCGTCGGAAATCTGAAAGAGAAGGGGCAGCCAAGTCAGATAATAAGATCTCATCTAGGAAGTCAAATGCCAACAGACTGGCAAGTACAGGTTTGGCGACTGGCAATATAGGTGATGGTCCTTCACATGATCGACTAGTATATGTTACAACATGTCTCGTTGGGCAGCAGGTGGAAGTGCATGTGAAAAATGGATCTATATACTCTGGAATATTTCATGCAACAAATACTGAGAAAGATTTTGGAATCGTTTTAAAGATGGCTCGATTGACAAAGGATGGTTCGTTGCGAGGGCAGAAGTCTGGTGTAGAATCAGTTAGCAAGGCTCATTCAAAGACTTTAATTATACCTGGCAAAGAATTTGTACAAGTCATAGCAAAGGGCGTTGCTGTTACTAGGGATGGCTTACCTAGTGAAGCTCACCATGAAATGTACCAGGACATCTTTGTTGATTCAGTAATATCACAATCACGTCATGCTGACTCAGAGAGAGAACTAAAACCATGGGTGCCTGATGAAGATGATCCACAATGCCCTGAACTGGAAAATATCTTTGGTGAAACTTGGAAGAGGGGCTGGGATCAGTTTGAAACAAACAAAACGTTGTTTGGTGTAAAAAGCACGTTCAATGAGGAACTTTATACCACAAAGCTCGAGAAAGGCCCTCAGACAAGAGAGTTGGAGAAGCAAGCTTTAAGAATTGCAAGAGAAATCGAGGGTGAGGATACCCAAGATCTTCATCTGGCAGAGGAAAGAGGCCTTTATCTACATAAGAATTTTGATATTGATGAAGAGACTAGATTCTCTTCAGTCTATAGGGATAAAGTGGTTGATGACAGTGGCTATGATGGGAATGAGGATATTCTGTTGGATTCATGCAATTCTGAAACCTTTGGAGATACATTCGCTTCAGTTGTTATGAGATCTGGTGAATCAAGTGATGGGAAAGATGATGATGGAGTTAGAACTTCATCAAATTCATCCTCTAAGGATTTACCACAATCATCTCAGTCAAATAATGGTGTGGATTTAGGCCATGCTGGTTCTCACAATCTTGCTAATCAGTTAGCATCTGAACTCCCTGCAAAAAGTGACCCTACTTCGGATGCTAAATGCAGGGTTCAGGGGGACTCACTTAGTGATCTGCATGGAGCCATTGACAGTAGCAAGGAAGAAATTCAGATAGAATCTGGGGATGTACAACCGTCAAAATCCAAGGACTTACTGTTATCACACAACTTGAAGAAAGATGACCCCAATACTGGGGCATTGCCTTCAAATGCCACGTCTCATGCCCCTTCATCTCATATTTCAATAAAGGCTCCTGTAAAGACAGGTTTGCCTGTTGATTTGATTGAGGGTTCAACATCTGAGAAAGGTAAAGGGGAAACAAATTCTTTAAAATCCTTTGGAATAACTGCTAGTTCTACATCAACTCGTACAGATTGTGTGAAAGGTGTTGAAGCATCTTCTGGTCCTGGTCTATCACCAAGTTCTTCGGTTGGTTCAGTATCTTCTGAAAAATCAGTATTGAATCCAAACGCAAAGGAATTCAAGCTCAATCCAAATGCTAAGAGTTTTGTTCCATCCCAATCACCAGTTAGGCCTCCCTCACAGGTGTCTGATGGCTCCTTCTATTACCCATCTAATGTAACTACTGTACCGCATATGACTGCCATTCCCATGGAACTTGGAATGGGACAAGCATTTGCTGGGCAGCAACCTGTCCTGTATAATCCACAAGTAGCACAAATGTCATCACAAGCATATTTCCATCCAAATGGACCACAGTACGGACAGATTCTTGGTCATCCTAGGCAAGTTTTGTACGTGCCAGGTTATTTACCTCAGGAAACACCATACAAGGGACGGGAATACTAA 2223 0.4269 MNAAAPNHSLCSLRRGFCFIALALGGSLPLRNLKTEITRFSSLNLDHTERTKLLTHLPPPFSVALILASRFRVLINLLQVVLELEGLLSGSDHRDSQLRMNLQQVGQSRSSNGYGRRKSEREGAAKSDNKISSRKSNANRLASTGLATGNIGDGPSHDRLVYVTTCLVGQQVEVHVKNGSIYSGIFHATNTEKDFGIVLKMARLTKDGSLRGQKSGVESVSKAHSKTLIIPGKEFVQVIAKGVAVTRDGLPSEAHHEMYQDIFVDSVISQSRHADSERELKPWVPDEDDPQCPELENIFGETWKRGWDQFETNKTLFGVKSTFNEELYTTKLEKGPQTRELEKQALRIAREIEGEDTQDLHLAEERGLYLHKNFDIDEETRFSSVYRDKVVDDSGYDGNEDILLDSCNSETFGDTFASVVMRSGESSDGKDDDGVRTSSNSSSKDLPQSSQSNNGVDLGHAGSHNLANQLASELPAKSDPTSDAKCRVQGDSLSDLHGAIDSSKEEIQIESGDVQPSKSKDLLLSHNLKKDDPNTGALPSNATSHAPSSHISIKAPVKTGLPVDLIEGSTSEKGKGETNSLKSFGITASSTSTRTDCVKGVEASSGPGLSPSSSVGSVSSEKSVLNPNAKEFKLNPNAKSFVPSQSPVRPPSQVSDGSFYYPSNVTTVPHMTAIPMELGMGQAFAGQQPVLYNPQVAQMSSQAYFHPNGPQYGQILGHPRQVLYVPGYLPQETPYKGREY 740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele41g1016 740 MobiDBLite consensus disorder prediction 534 550 - -
Lele41g1016 740 MobiDBLite consensus disorder prediction 423 462 - -
Lele41g1016 740 Pfam Ataxin 2 SM domain 157 241 IPR025852 -
Lele41g1016 740 MobiDBLite consensus disorder prediction 606 622 - -
Lele41g1016 740 SMART LsmAD_2 317 388 IPR009604 -
Lele41g1016 740 MobiDBLite consensus disorder prediction 114 129 - -
Lele41g1016 740 MobiDBLite consensus disorder prediction 526 552 - -
Lele41g1016 740 Pfam LsmAD domain 317 387 IPR009604 -
Lele41g1016 740 MobiDBLite consensus disorder prediction 595 622 - -
Lele41g1016 740 Gene3D - 164 238 - -
Lele41g1016 740 PANTHER ATAXIN 2-RELATED 130 730 IPR045117 GO:0003723
Lele41g1016 740 MobiDBLite consensus disorder prediction 439 462 - -
Lele41g1016 740 MobiDBLite consensus disorder prediction 638 655 - -
Lele41g1016 740 MobiDBLite consensus disorder prediction 103 139 - -
Lele41g1016 740 MobiDBLite consensus disorder prediction 636 655 - -
Lele41g1016 740 FunFam Polyadenylate-binding protein-interacting protein 3 161 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele41g1016 Lele-ChrLele41 19462932 19470163 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele41g1016 41 19462932 19470163 Lele38g0265 38 2135997 2136728 CCT
Lele41g1016 41 19462932 19470163 Lele40g0252 40 2004828 2007379 CCT
Lele41g1016 41 19462932 19470163 Lele43g0380 43 3411492 3417267 hybridization
Lele41g1016 41 19462932 19470163 Lele44g0381 44 2789809 2795894 hybridization