Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele41g1015 ATGCACAGGTATACTACATTGAGAATTGCTATTTTAACAGGTAAGAAATCATCTGCCTCCAAGGGTTTAAGCTTGAAAATGGGAGTTCTGCCGCAAAAATGTCATAATACCAAGCCATTGAGTTTCCAGTTTCAAGATCAGGATTCATCTTCTACTCAATCAACTGATCAATCTTATCCAGAAGTTGGTTCAGCTCAATCAGGTCAAATTTCTATCCAGTGTAGCAATTCTTCTGCGCATTCAAAATGTAGTGCAAGTGCAGGGGGTTTCATCAGGTCATCATTGGGGAGTCAGAGTCTTTGTTTTCCTCCTTTCCAAGTGGATCATAACCAATCAACTGCTCATATTGCATTTCGCCATGCTGAACCATGCTTTGGTGGTGTTCTTGCTGCATATGCGCCACAGTCTAAGATTCATCAGGCCCAACTCATGGGATTCACTTCTGTTCGAGTTCCTCTTCCTTTTGATCTGACAGAAGAACCGATATATGTGAATGCAAAGCAGTACCATGCTATTCTGAGGCGTAGACAGTATCGCGCCAAACTTGAAGCTCAGAACAGACTCATCAAAGCTCGGAAACCATATCTTCACGAGTCCCGCCATCGGCATGCATTAAGGAGGGCCAGAGGTTCTGGTGGTCGCTTTCTCAACAGCAAACAACTCCAGGAAGCAAGCCTCAAAACAGACAGTCATGGCCTGAAAGTTTGGGAAGGTACTAGGTTGAACCTAGGTGGAGGAAATATGTCAGAATCCAAAAATCATGCTGATGTAGAAAACTACAGAGATGGTTCTGTTATCACAAGTCCATCCCATAGTGATGGCATGTTCAAGCAACATGAGTCCAGCTTCAGGCTCTCTAGTTACCCTCCTCACATTGGATGGAACATGCAAGGCTACTCAGCTGATCCCGGCGGCACTCGTGGCGGTGGTGGGAATCAACAGCATGTGTCTGTTCTCATGTGA 963 0.4496 MHRYTTLRIAILTGKKSSASKGLSLKMGVLPQKCHNTKPLSFQFQDQDSSSTQSTDQSYPEVGSAQSGQISIQCSNSSAHSKCSASAGGFIRSSLGSQSLCFPPFQVDHNQSTAHIAFRHAEPCFGGVLAAYAPQSKIHQAQLMGFTSVRVPLPFDLTEEPIYVNAKQYHAILRRRQYRAKLEAQNRLIKARKPYLHESRHRHALRRARGSGGRFLNSKQLQEASLKTDSHGLKVWEGTRLNLGGGNMSESKNHADVENYRDGSVITSPSHSDGMFKQHESSFRLSSYPPHIGWNMQGYSADPGGTRGGGGNQQHVSVLM 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele41g1015 320 MobiDBLite consensus disorder prediction 296 320 - -
Lele41g1015 320 Gene3D - 158 219 - -
Lele41g1015 320 ProSiteProfiles NF-YA/HAP2 family profile. 158 218 IPR001289 GO:0003700|GO:0006355
Lele41g1015 320 ProSitePatterns NF-YA/HAP2 subunit signature. 163 183 IPR018362 GO:0003677|GO:0016602
Lele41g1015 320 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 34 280 IPR001289 GO:0003700|GO:0006355
Lele41g1015 320 SMART cbf3 157 218 IPR001289 GO:0003700|GO:0006355
Lele41g1015 320 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 160 215 IPR001289 GO:0003700|GO:0006355
Lele41g1015 320 PRINTS CCAAT-binding transcription factor subunit B signature 161 183 IPR001289 GO:0003700|GO:0006355
Lele41g1015 320 PRINTS CCAAT-binding transcription factor subunit B signature 192 215 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele41g1015 Lele-ChrLele41 19456156 19460407 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele41g1015 12 318 CCAAT-HAP2 Transcription Factor Family AT1G17590 42.547 1.40e-51 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Lele41g1015 CBFB_NFYA 4.3e-26 No_clan