Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele41g1014 ATGGACGGTGGAGCTCAGTACAATCCTCGCACGGTGGAAGAGGTTTTTAGGGATTTCAAGGGAAGAAGAGCTGGACTCGTAAAAGCCCTTACCACCGACGTTGAAGAATTCTACAACCAATGTGATCCTGAGAAGGAGAATTTGTGCTTGTATGGTTATCCTAGTGAGCAGTGGGAAGTAAATTTACCTGCTGAAGAAGTTCCTCCAGAACTTCCAGAGCCTGTGCTGGGTATAAACTTTGCTAGGGATGGGATGCAGGAAAAAGACTGGTTATCTTTAGTTGCTGTCCACAGTGATGCATGGTTACTTGCTATCGCTTTCTATTTTGGAGCCAGATTTGGGTTTGATAGAGCTGACAGGAAACGACTTTTCAATATGATTAATGAACTACCAACGATATTTGAAGTTGTTACGGGTACAGCGAAGAAACAACTTAAGGAGAAGTCTTCAGGTTCAAATCACAGTGGCAGTAAATCAAAGTCCAACTCTAAAGCGCGAGGTTCAGAATCTGTGGGGAAGCATTCAAAGGCAATTCAATCAAGAGACGAGGAAGAAGGACTGGATGAAGTAGATGAAGATGAACATGGAGAGACATTGTGTGGGGCATGTGGTGAGAATTATGGTACTGATGAATTCTGGATTTGTTGTGACATCTGCGAAAAATGGTTCCATGGAAAATGTGTGAAGATCACCCCAGCTAGGGCAGAGCATATCAAACAATACAAATGCCCATCATGCAGTAACAAGAGAGCTCGTCCCTGA 762 0.4357 MDGGAQYNPRTVEEVFRDFKGRRAGLVKALTTDVEEFYNQCDPEKENLCLYGYPSEQWEVNLPAEEVPPELPEPVLGINFARDGMQEKDWLSLVAVHSDAWLLAIAFYFGARFGFDRADRKRLFNMINELPTIFEVVTGTAKKQLKEKSSGSNHSGSKSKSNSKARGSESVGKHSKAIQSRDEEEGLDEVDEDEHGETLCGACGENYGTDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele41g1014 253 SUPERFAMILY FYVE/PHD zinc finger 191 250 IPR011011 -
Lele41g1014 253 MobiDBLite consensus disorder prediction 145 166 - -
Lele41g1014 253 ProSiteProfiles Zinc finger PHD-type profile. 197 249 IPR019787 -
Lele41g1014 253 CDD PHD_AL_plant 199 249 IPR044104 -
Lele41g1014 253 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 190 248 IPR013083 -
Lele41g1014 253 MobiDBLite consensus disorder prediction 167 183 - -
Lele41g1014 253 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Lele41g1014 253 ProSitePatterns Zinc finger PHD-type signature. 200 246 IPR019786 -
Lele41g1014 253 MobiDBLite consensus disorder prediction 145 192 - -
Lele41g1014 253 PANTHER CPG BINDING PROTEIN 8 252 IPR045104 GO:0006355|GO:0042393
Lele41g1014 253 SMART PHD_3 199 247 IPR001965 -
Lele41g1014 253 Pfam PHD-finger 200 249 IPR019787 -
Lele41g1014 253 FunFam PHD finger alfin-like protein 192 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele41g1014 Lele-ChrLele41 19450944 19455090 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele41g1014 1 252 Alfin-like Transcription Factor Family AT3G42790 77.075 2.27e-129 364
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Lele41g1014 Alfin 1.9e-69 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele41g1014 41 19450944 19455090 Lele43g0383 43 3423954 3428820 hybridization
Lele41g1014 41 19450944 19455090 Lele44g0383 44 2802410 2807218 hybridization