Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele41g1012 ATGGCGTCGTCTTCACTGTTCCAGTCTTCTCCCTTCTCCTTCCATTGCAACCCCTCTCTCCCACAACCACCACCCAAATCCAACTTCATAGTCAACGCTCACTTCCAAAATGGATCCTCCAAGCCTCTCTCTCACAACAACAACAACGCCTCGCCAGTCCCACCGGCGGTTTCAAAGAACCGCCGCCCTGCCGATGAGAACATCCGCGATGAGGCTCGCCGCGAATCTGTCACTTACGCACATCAATTCTCCGCCCAGTACGTCCCCTTTAATGCCGATCCTTCATCCACAGAATCCTACTCTCTCGACGAGATCGTGTATCGCTCCCAATCTGGTGGGCTTCTCGATGTTCAGCACGACATGGAAGCTCTGAAGAAATACGATGGTCAGTACTGGCGATCCCTGTTTGACTCTCGTGTGGGTAGAACCACCTGGCCGTACGGCTCCGGTGTTTGGAGCAAGAAGGAATGGGTGTTACCCGAGATCGACAGTGACGACATCGTGAGTGCATTCGAAGGAAACTCGAATCTCTTCTGGGCTGAGCGTTTTGGCAAGCAGTTTCTGGGCATGAACGATTTGTGGGTCAAACACTGTGGGATCAGCCACACTGGGAGTTTCAAAGATCTCGGAATGACTGTTTTGGTGAGCCAAGTTAACAGGTTAAGAAAAATGAAACGTCCTGTTGTAGGTGTTGGTTGTGCTTCCACAGGAGACACTTCTGCTGCTTTATCTGCTTATTGTGCTTCTGCAGGAATCCCATCAATTGTGTTTTTGCCTGCAAATAGGATTTCCATTGCTCAACTGGTCCAGCCAATTGCAAATGGTGCGTTTGTGTTGAGCCTTGATACAGATTTTGACGGGTGTATGCATTTGATAAGGGAAGTTACTTCTGAATTACCTATATACCTGGCTAATTCTCTGAACAGCTTGAGATTAGAAGGGCAGAAAACTGCAGCTATTGAGATTTTGCAGCAGTTTAATTGGCAAGTACCTGATTGGGTTATAGTGCCAGGAGGGAATCTTGGAAACATATATGCATTCTATAAAGGGTTTCACATGTGCAAAGAGTTAGGACTAGTTGATAGGATTCCTAGGCTTGTTTGTGCTCAAGCGGCAAATGCTAATCCTCTCTATCAGTACTTCAAGTCAGGGTGGAAAGAGTTTAAGCCTGTAAAGGCCAACACTACATTTGCATCTGCCATACAAATTGGTGATCCTGTTTCAATAGATAGAGCTGTTTATGCACTGAAGAACTCAAATGGCATTGTTGAGGAAGCAACAGAAGAAGAACTAATGGATGCTACGGCTCAAGCAGATTCTACTGGTATGTTTATATGTCCTCATACCGGGGTTGCTTTGACCTCATTGATTAAATTAAGGAAAAGGGGGATCATAGGGCCAACAGATAGGACTGTGGTAGTAAGTACTGCTCATGGGTTGAAGTTTACACAATCGAAAATTGAATACCATTCAAAAAATATTGACGGCATGGCTTGCAAATTTGCTAACCCGCCAGTGCAAGTGAAGGCGGATTTTGGGTCAGTTATGGATGTTTTGAAGAAGTATTTGATCAGTAAGGCGCCTAAACACTAG 1593 0.4589 MASSSLFQSSPFSFHCNPSLPQPPPKSNFIVNAHFQNGSSKPLSHNNNNASPVPPAVSKNRRPADENIRDEARRESVTYAHQFSAQYVPFNADPSSTESYSLDEIVYRSQSGGLLDVQHDMEALKKYDGQYWRSLFDSRVGRTTWPYGSGVWSKKEWVLPEIDSDDIVSAFEGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCASAGIPSIVFLPANRISIAQLVQPIANGAFVLSLDTDFDGCMHLIREVTSELPIYLANSLNSLRLEGQKTAAIEILQQFNWQVPDWVIVPGGNLGNIYAFYKGFHMCKELGLVDRIPRLVCAQAANANPLYQYFKSGWKEFKPVKANTTFASAIQIGDPVSIDRAVYALKNSNGIVEEATEEELMDATAQADSTGMFICPHTGVALTSLIKLRKRGIIGPTDRTVVVSTAHGLKFTQSKIEYHSKNIDGMACKFANPPVQVKADFGSVMDVLKKYLISKAPKH 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele41g1012 530 ProSitePatterns Serine/threonine dehydratases pyridoxal-phosphate attachment site. 197 211 IPR000634 GO:0006520|GO:0030170
Lele41g1012 530 MobiDBLite consensus disorder prediction 36 55 - -
Lele41g1012 530 PANTHER CYSTATHIONINE BETA-SYNTHASE 168 487 - -
Lele41g1012 530 FunFam Threonine synthase 1, chloroplastic 267 527 - -
Lele41g1012 530 TIGRFAM thrC: threonine synthase 157 482 IPR004450 -
Lele41g1012 530 SUPERFAMILY Tryptophan synthase beta subunit-like PLP-dependent enzymes 64 522 IPR036052 -
Lele41g1012 530 CDD Thr-synth_1 152 482 - -
Lele41g1012 530 Pfam Pyridoxal-phosphate dependent enzyme 170 476 IPR001926 -
Lele41g1012 530 MobiDBLite consensus disorder prediction 36 66 - -
Lele41g1012 530 Gene3D - 287 524 IPR036052 -
Lele41g1012 530 Gene3D - 62 284 IPR036052 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele41g1012 Lele-ChrLele41 19441731 19443323 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele41g1012 41 19441731 19443323 Lele43g0385 43 3436486 3446202 hybridization
Lele41g1012 41 19441731 19443323 Lele44g0385 44 2813030 2814625 hybridization