Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele41g1002 ATGGGAAATCAGAAGCAGAAATGGACGGCGGAGGAAGAAGAAGCATTACTCGCCGGAATAGCGAAGCACGGTCCCGGCAAGTGGAAGAACATTCTAAAGGATCCCGAGTTTGCCCCTTTCCTCACTTCCCGTTCCAACATTGACCTCAAGGATAAATGGAGGAACTTAAGTGTTAATACTGCTGCTCAAGGTTCTAAAGATAAAGCAAGGAATCCAAAGATCAAAGCTCTTATGCCTGCTCCACCTGCTAACGTTCAAAATGCTACTCCTGCTGCTCCAGTTCGTCAAAGTGCAGCTTCTGATACTGCCAGCGATGATGCTACTCAAAAAGCACAGGATGTGAAGAATGCTCCTCGGTATAACGGAATGGTTTTTGAAGCCCTGTCAACAATAAAAGATACTAATGGTTCTGACATAAATACCATTGTTAGTTTCATTGAGAAAAGGCATGAGGTACCTCCAAATTTCAGAAGGGCATTAAGTACGAGGTTGAGGAGGCTTGTTGCTCAAGGAAAACTTGAGAAGGTACAAAATTGTTACAAGATAAAAAAGGACAGCCCTTCCAGGGAGAAAACACTTCCAATGAAACAAAAGGACATCTGGCAACATCAACCACCAGCCTCTAGTTTAGTGCCGCCTTATGAGAGTGCTAAGGATGCTGCTGATACTGCAGCCTACAGACTTGCAGAAGCCGAGAACAAATCATTTCTGGCTGCTGAGGCAGTCAAGGAAGCAGAGAGACTCGCAAAATTTGCCGAAGAAGCTGATGCAGTATTACAACTAGTGAAAGAGATTTATGAACAATGTACTGATAAACAGTTCTATCTACATGCTCGCATGGTGAAACTATTGTCTTGGCTTAAAGTTGGTGAAATACAAGGTCGATCATAG 891 0.4355 MGNQKQKWTAEEEEALLAGIAKHGPGKWKNILKDPEFAPFLTSRSNIDLKDKWRNLSVNTAAQGSKDKARNPKIKALMPAPPANVQNATPAAPVRQSAASDTASDDATQKAQDVKNAPRYNGMVFEALSTIKDTNGSDINTIVSFIEKRHEVPPNFRRALSTRLRRLVAQGKLEKVQNCYKIKKDSPSREKTLPMKQKDIWQHQPPASSLVPPYESAKDAADTAAYRLAEAENKSFLAAEAVKEAERLAKFAEEADAVLQLVKEIYEQCTDKQFYLHARMVKLLSWLKVGEIQGRS 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele41g1002 296 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
Lele41g1002 296 MobiDBLite consensus disorder prediction 89 115 - -
Lele41g1002 296 Gene3D - 112 198 IPR036388 -
Lele41g1002 296 PANTHER SINGLE MYB HISTONE 4 1 273 IPR044597 GO:0003691
Lele41g1002 296 Pfam linker histone H1 and H5 family 118 177 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lele41g1002 296 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Lele41g1002 296 Coils Coil 214 234 - -
Lele41g1002 296 FunFam Telomere repeat-binding factor 1 2 58 - -
Lele41g1002 296 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 116 184 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lele41g1002 296 SUPERFAMILY "Winged helix" DNA-binding domain 116 192 IPR036390 -
Lele41g1002 296 Gene3D - 2 58 - -
Lele41g1002 296 MobiDBLite consensus disorder prediction 80 115 - -
Lele41g1002 296 SUPERFAMILY Homeodomain-like 2 58 IPR009057 -
Lele41g1002 296 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Lele41g1002 296 SMART sant 4 59 IPR001005 -
Lele41g1002 296 CDD SANT_TRF 6 56 - -
Lele41g1002 296 SMART h15plus2 114 179 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele41g1002 Lele-ChrLele41 19390361 19393678 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele41g1002 1 277 Single Myb Histone (SMH) Gene Family AT1G17520 52.542 1.71e-87 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lele41g1002 Linker_histone 8.1e-10 CL0123