Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele41g1000 ATGCAGCTTTACTGGGATTTTGATTTACAGCAACACTTGCTCAGGCTTTCTGCTGATGGACAAGAACTTTTTACCTCCTATGATGAGGTTTATGATACTTTTGATGCTATGGGATTACAAGAAAATCTTCTGAGAGGCATCTATGCTTATGGTGGCACAAGTTTTCGTGAAGATCAGCGCATTCTCCAAGCTGGTGTTCATGTTGATGTTGGAACTCCCGGTCATGTGTTTGACATGCTGCGGAGGCAGTCTCTTCGTCCAGATTACATAAATATGTTTGTTCTGGATGAGGCTGATGAAATGCTTTCTCGAGGTTTCAAGGACCAGCTGCTGCCCGGTAAAATTCAGGTTGGAGTCTCCTCTGCTACAATGCCTCCAGAGGCTCTTGATATTACCAGGAAGTTAATGAACAAGCCTGTGAGAGTCTTGGTAAAGCGTGATGAACTGACTCTTGAAGTGTCATTTTTGTCAACATCAACACCAGGCGCAAGGTGGACTGACTCACCGATAAGATGTGAAGCAACAACCATACAGTATTTTCTGATCAATACTGATCTCTTGGCTCGTGGTATTGATGTGCAGCAAGTTTCTCTTGTCATCAACTATGATCTGCCAACCCATTCAGAAGTTCTATAA 636 0.4324 MQLYWDFDLQQHLLRLSADGQELFTSYDEVYDTFDAMGLQENLLRGIYAYGGTSFREDQRILQAGVHVDVGTPGHVFDMLRRQSLRPDYINMFVLDEADEMLSRGFKDQLLPGKIQVGVSSATMPPEALDITRKLMNKPVRVLVKRDELTLEVSFLSTSTPGARWTDSPIRCEATTIQYFLINTDLLARGIDVQQVSLVINYDLPTHSEVL 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele41g1000 211 Gene3D - 178 211 IPR027417 -
Lele41g1000 211 Pfam Helicase conserved C-terminal domain 174 207 IPR001650 -
Lele41g1000 211 Gene3D - 21 153 IPR027417 -
Lele41g1000 211 Pfam DEAD/DEAH box helicase 42 127 IPR011545 GO:0003676|GO:0005524
Lele41g1000 211 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 27 142 IPR014001 -
Lele41g1000 211 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 180 209 IPR027417 -
Lele41g1000 211 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 35 152 - -
Lele41g1000 211 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 42 144 IPR027417 -
Lele41g1000 211 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 94 102 IPR000629 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele41g1000 Lele-ChrLele41 19381113 19383160 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele41g1000 7 66 Eukaryotic Initiation Factors Gene Family AT1G72730 50.820 4.66e-09 53.5