Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele41g0979 ATGAAGGGTTTGATGTTTCACCAGCAACAGCAACAACAAGTAGTGGAAGAGAACATGTCTAATTTGACTTCTGCATCTGGTGAAGCCAGTGTTTCATCAGGCAATAGAAACGAAATTGCTACCAATTATCCTTCACAACAACAATACTTTGCTTCCCCATCAACTCAAACTCAAACTCAGCCCCTGAAGAAAAAGAGAAACCTTCCTGGAAACCCAGACCCAGATGCTGAAGTTATAGCCTTGTCTCCAAAGAGTCTTCTGGCGACAAACAGGTTCATATGTGAGATCTGCAACAAAGGATTTCAAAGAGACCAGAATCTGCAACTTCATAGAAGAGGGCACAATCTGCCATGGAAGCTGAAGCAGAGAACGAACAAAGAGGTGAGGAAGAAGGTGTATGTGTGCCCAGAACCCACATGTGTGCACCATGACCCAGCAAGAGCACTTGGGGACCTAACTGGGATAAAGAAGCACTTCTGCAGAAAGCATGGTGAGAGGAAGTGGAAATGTGACAAGTGCTCCAAGAGGTATGCAGTTCAATCAGATTGGAAAGCTCACTCCAAGACCTGTGGCACAAGAGAGTACAGATGTGACTGTGGAACCCTCTTCTCAAGGAGAGACAAAGATGATGATGAGATCATGATAGAGGTTGAAGGACACAAGGAGTAG 669 0.4499 MKGLMFHQQQQQQVVEENMSNLTSASGEASVSSGNRNEIATNYPSQQQYFASPSTQTQTQPLKKKRNLPGNPDPDAEVIALSPKSLLATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYVCPEPTCVHHDPARALGDLTGIKKHFCRKHGERKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDKDDDEIMIEVEGHKE 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele41g0979 222 SMART c2h2final6 92 114 IPR013087 -
Lele41g0979 222 SMART c2h2final6 133 163 IPR013087 -
Lele41g0979 222 SMART c2h2final6 168 188 IPR013087 -
Lele41g0979 222 ProSitePatterns Zinc finger C2H2 type domain signature. 94 114 IPR013087 -
Lele41g0979 222 Gene3D Classic Zinc Finger 72 139 - -
Lele41g0979 222 MobiDBLite consensus disorder prediction 1 65 - -
Lele41g0979 222 SUPERFAMILY beta-beta-alpha zinc fingers 91 188 IPR036236 -
Lele41g0979 222 FunFam protein indeterminate-domain 12-like 71 139 - -
Lele41g0979 222 Gene3D Classic Zinc Finger 147 218 - -
Lele41g0979 222 MobiDBLite consensus disorder prediction 1 73 - -
Lele41g0979 222 ProSiteProfiles Zinc finger C2H2 type domain profile. 92 114 IPR013087 -
Lele41g0979 222 Pfam Zinc-finger double-stranded RNA-binding 92 114 IPR022755 -
Lele41g0979 222 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 42 208 IPR031140 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele41g0979 Lele-ChrLele41 19230467 19233892 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele41g0979 4 207 IDZ Gene Family AT1G55110 76.555 5.44e-108 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele41g0979 zf-C2H2_jaz 2.6e-05 CL0361