Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele41g0978 ATGGCGGATGTTTCGCTTATTTGGGATTTAGTGAAAGATGCTTTGGCTATTGTTGGAAAAGGTTTAGAATACAAGAGCACTCGCAAGAATCTGGAGTCAGCCGTCGAGGATTTGAGTCCAATGGTTGAAAAGATCGAACAAGCCATGAATCAGATGGATCTCCCAACTGATCATATACAGAAACTGAAGGAGAAATTAGCAGAAAACAAGGAGGCTCTTGGAAAACACAAAATCCATTGGTGGAGTTGTGTTCTTGCCCCTTATTCTCAGACCAAACTATCTGAAGGGTTGAATTCGCTAGAAAGGACAATCTCTGTTCAGACACAAATTCTCATGCTTAAGCATTTGACTGATATTCTCTCCATGCTCAGTTCTCAAGGTCACCATAGCCTTGGAAGCTCAAACAATGGCGGGACACAGATCTTGAAGGATCATTTTGATGATAGATGCTCCCAATTTACAGTGGGACTTGATGATGATTCCATCAAAGAGTTGAAGCTTAAGCTGCTTCATGGTGATGAGCAAGTTCTGAACTTGTATGGTTTACCAGGATCCGGGAAGACTACCATGGCTAAACAACTCTGTCTTGATCTCCAAGTCAAAGGTAAATTCAAGTCCAATGTCATATTTGAGACGTTGGGTTCACAGATTCAAGGCAAAGAGGTAATCAACAAGTTGCGGGATCAACTGTCTAAATATGGGGAAAATCCAGTGCTGTTGGTATTGGATGATGTTTGGCCTCACTCAGAAAATATTGTTGACAAGTTACAACTAAGATCACCAAAATCTAGAATTTTGGTGACTTCAAGAGCTCAAATCAGAACAGTGAGAACCAGATTCCCTATGACTCTTCTCTGTGAGGAAGATGCAGAAAAACTTCTCCGTCACTTAATTCAACCCAGTGACGTCGATTTTAGTGAGCCAGAAAGACGTAAAATTCTCCTCCAGATAGTTGAAGGTTGTAAGGGCTTACCATTGGCTCTTGAATTCATTGGGGGAAAACTGAAAGGGAAGGATATTGAAGCGTTTCAAAAGGTGAAATTAGAATGGTCGCAAGGTGTTTCTATTCTTGATTCAAATACAGAGCTGCTTGACCATCTCCAAAATACATTGAATCTTTTGGTAGATGAATCCATCATGGAGTGTTTTATGGACCTTGGGTTGTTTCCTGGTGTTCATAAAGTCCCCATTACTGCACTCATAGACATGTGGATTGAACTGTATGAACTCAATGAGCCAAGAAGAAGCATAGATGCAGTCATCTTCATCAAAGAATTAGTAGCCATGAATTTGGCCGCTGGGATCAAAATTAGAAGGATAGTTGGAATGGACGTGGACAATTACTATAATAACCACTTCCTCTTGCAGCATGGTCTTTACAGAGACCTAGCCATCCGTATGAGCCAACAAGAACCATTGGAGAATAGAAAGAGATTGATCATTGATATGAATCAATGGCGGCCCCAGCAACAACAACGTTTAGCTGCTTCTATCCTCTCAATATCAGCAGAACAAAACATCACTCCTGATTGGTGCAACATTCAAGCACCTGGTGCAGTGGTCCTGGTCTTGAATTTAAACACGGCAGAATACACTTTACCTGAATTCATTAAGGAAATGGGAAGCCTGAAAGTTCTTATAGTCACCAATTATGGTTTCTGCAGCACTGACATAAGAAACTTGGAGCTACTTGGATTTTCAATGAGCCTTAAAAGAATCAGATTGCAGCAAGTTTCAATTCCATGCCTGTGTGATCTGAAGAATGTGACCAAGCTATCACTTCACATGTGTCACGTGAAGAATGCTTTTGAGAACAGTTCCATTGAATTCTCAGAAGCAATGCCAAAACTTGAAGAATTGAGCATTGAGTATTGCGAAGATTTGGAGAATTTGCCAACTGGGCTCTGCTATATCGTCACCATGAAGAACCTCACAGTAAGTGACTGTCACAAGTTTATTGAACTACCTGAAGAAATTGGGAAGCTTGAGAATTTGGAATTACTGAGGATCAGTTGCTGTGCTAAGATTGAAGAAATGCCGAAGTCAATCACAAAGCTGAAAAGTCTAAACTTTCTGGACATATCATTCTGTGTGAGCCTTAAGAAATTTCCAGAAGAAATTGGTGAGCTGCAGAATCTAATAAAGCTTTATATGACGGGTTGCCCAGTACGTGAATTGCCAAACTCAATAATGGATTTTCAGAAGTTAGAGAGTGTGATATGCGATGAGTATACATATCCCTTGTGGGAAGTTATCAAACTGATGCGATTTCCTGGGCTGAACATAAAGATAGCCACCATGGATATTAGCTTGAATTGGCTTTCCTGA 2328 0.4055 MADVSLIWDLVKDALAIVGKGLEYKSTRKNLESAVEDLSPMVEKIEQAMNQMDLPTDHIQKLKEKLAENKEALGKHKIHWWSCVLAPYSQTKLSEGLNSLERTISVQTQILMLKHLTDILSMLSSQGHHSLGSSNNGGTQILKDHFDDRCSQFTVGLDDDSIKELKLKLLHGDEQVLNLYGLPGSGKTTMAKQLCLDLQVKGKFKSNVIFETLGSQIQGKEVINKLRDQLSKYGENPVLLVLDDVWPHSENIVDKLQLRSPKSRILVTSRAQIRTVRTRFPMTLLCEEDAEKLLRHLIQPSDVDFSEPERRKILLQIVEGCKGLPLALEFIGGKLKGKDIEAFQKVKLEWSQGVSILDSNTELLDHLQNTLNLLVDESIMECFMDLGLFPGVHKVPITALIDMWIELYELNEPRRSIDAVIFIKELVAMNLAAGIKIRRIVGMDVDNYYNNHFLLQHGLYRDLAIRMSQQEPLENRKRLIIDMNQWRPQQQQRLAASILSISAEQNITPDWCNIQAPGAVVLVLNLNTAEYTLPEFIKEMGSLKVLIVTNYGFCSTDIRNLELLGFSMSLKRIRLQQVSIPCLCDLKNVTKLSLHMCHVKNAFENSSIEFSEAMPKLEELSIEYCEDLENLPTGLCYIVTMKNLTVSDCHKFIELPEEIGKLENLELLRISCCAKIEEMPKSITKLKSLNFLDISFCVSLKKFPEEIGELQNLIKLYMTGCPVRELPNSIMDFQKLESVICDEYTYPLWEVIKLMRFPGLNIKIATMDISLNWLS 775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele41g0978 775 SUPERFAMILY RNI-like 523 752 - -
Lele41g0978 775 Pfam Arabidopsis broad-spectrum mildew resistance protein RPW8 19 125 IPR008808 -
Lele41g0978 775 Pfam NB-ARC domain 237 346 IPR002182 GO:0043531
Lele41g0978 775 Pfam NB-ARC domain 160 232 IPR002182 GO:0043531
Lele41g0978 775 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 160 377 IPR027417 -
Lele41g0978 775 CDD AAA 179 257 - -
Lele41g0978 775 Gene3D - 137 279 IPR027417 -
Lele41g0978 775 Gene3D Ribonuclease Inhibitor 471 750 IPR032675 -
Lele41g0978 775 Gene3D - 285 374 IPR042197 -
Lele41g0978 775 PRINTS Disease resistance protein signature 321 335 - -
Lele41g0978 775 PRINTS Disease resistance protein signature 176 191 - -
Lele41g0978 775 PRINTS Disease resistance protein signature 684 700 - -
Lele41g0978 775 PANTHER PLANT BROAD-SPECTRUM MILDEW RESISTANCE PROTEIN RPW8 12 774 IPR039203 GO:0050832
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele41g0978 Lele-ChrLele41 19223846 19226845 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele41g0978 553 740 WRKY Transcription Factor Family AT4G12020 26.887 2.03e-08 56.2