Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele41g0972 ATGCTTCTGGTTTCACCACCTTCCCTTCCTTGGGTAGTTGGTGAAAGTCGAGAGATCTTCCGACTTGAATCTATAAATTCTTCTGAACTGAAAATGGGGTTGCAGCTGATTATTCTTCTCTTTAAGCTACATTTAGTTTTCAGTGCTCCACAACTTCATGAGCATAGAGCCACCAATCTGCACCATTCCAGAAGTCATTCAAGTATTGCGCTTCTCCCATCACAGCCATCTTCTAGAGTTCCTGCAAGTATTGCAATTCCACCATCAAAATCATTACCTCATGGTTCAGTAGATTCTCCAATATCACGACATCATAAGCATTACCATTCCAGAAGAAAGTTCAGAAACCCAACCCCTACTTACAATCATGGAGGTCATTCAGTTTTTCCTGCACAGCCTCCTTTTCCTGCCCCAAAGACCAGGAATTTGCCTGCACAATCACGAGCATTTTCATCAGTCCCCTTGAATGCTCCTTCTCCTTCGCCTAGAGTTCTACCCCTTCATTCATCCTCAAAGCATATGAAGAATCCATCACCATCAACTGTTTTGTCTTTGCCACCTCCACCTCCTAATGACGATTGCATGTCAGTGACTTGTTCAGAGCCTCTTACATATACGCCTTCTGGATCACCTTGTGGTTGTGTGTGGCCAATACAAGTTAAGCTCGACCTTGGCATTGCAATATACAAGTTTTTCCCTCTGGTTTCAAAGCTAGCTGAAGACATTGCAGCCAGTGCTTCGCTTAATCGGAACCAAGTTCGCATTGTGGGAGCTGATGCCCCTCATCACCAACTAGAGAAAACCAATGTTCTTATAAACCTTGTACCTGAAGGAGTAAATTTCGATGATGCAACAGCATTTTCAATATATAAGAAATTCTGGCACAAGGAGATTCTCACCGATGCTTCCCTCTTTGGATCCTATGAAGTGCTCTATGTCCATTATGCAGGTCTTCCGCCATCTCCACCTTCTTCTCCTTCAAGCGTCTCTGGTATGGATGATGTGCCATACCCTGGCTATGACTACAATGGAACAATAATGAAACCTTTAGGAGTAGATGTACCAGTGAATGAAAAGCATGGGACTAGTGAAAGAGGAAGCATGATTATAATAATTGTGTTGTCATGTATAACTCTATCTGTTCTATTCATTGGAGCTGCCTGGCTTTATCTGTTGAAATGTGGTTCTTGTGTTCAACACCCTGAACATTTCCCAGATGATTCAATCCTATCATCTTCAAAACCATCAGGGGCTATTAAGTCATTGACTTATGGGAGCATACCAGGTTCTAGATCAATGTCGTTCAGCTCTGGAACAATAATATATACAGGGTCTGTTAGGACCTTCACTTTAAATGAAATGGACAAAGCAACAAACAACTTTGATGCTCTTAGAATAATAGGAGAAGGAGGCTTTGGGCTTGTCTATAAAGGTGTTCTACATGATGGAAGGGATGTGGCTGTGAAGATTCTGAAAAGGTATGATTATCATGGTGGCCGCGAATTCTTGGCAGAAGTCGAGATGCTTAGCCACCTTCATCACAGAAATCTAGTCAAATTGATTGGTATATGCATGGAGAATCAAACACGCTGCTTAATCTATGAGCTTATCCCTAATGGAAGTGTGGAATCCCACTTGCATGGTGCTGACAAGAAAACTAGTCCACTTGATTGGAATGCTAGGATGAAGATTGCACTCGGTGCAGCGCGGGGTTTGGCATATCTCCATGAAGATTCAAATCCCTGTGTGATACACAGAGACTTCAAAGCTAGCAACATCTTGTTGGAACATGATTTTACACCAAAGATTGCAGATTTTGGATTGGCTAGAACAGCACTCGATGAGGGAACCAAGCACATCTCCACACATGTTATGGGAACATTCGGCTACCTGGCTCCTGAATATGCAATGACTGGCCATCTTCTTGTGAAAAGTGATGTGTACAGCTATGGAGTTGTACTCGTTGAACTCCTAACAGGAAGAAAGCCTGTGGATTTGTCACAGCCACCAGGTCAAGAAAACCTGGTGGCTTGGGTTCGTCCGCTTCTCACGAGCAAGGAGGGTTTACAGACAATCATAGACCCGGTTTTAGAGAGCAACGTGTCTTTTGAAACCGTGGTAAAAGTTGCAGCTATCGCATCGACGTGTGTGCAGCCAGAAGTCTCTCAACGCCCTTTCATGGGTGAAGTTGTTCAGGCCTTGAAGTTGGTTTGCTGTGAGTTTGATGATACAAGCATTATGAGATCAAGAAGCTTCCATGAAGAGAGTCTTCTTATCGATGGGGATGGGAAATTTTCGGGTGAGATGATGGGTTTTCAGACATTAACAGAATCAAAGTTGCTCAGTCCATTATCGGGCCAGGGATTTGAGTCCTTCAGAAGGCATTCTGCTTCAGAGCCTCTTACTACCGAGAAAAATAGGAAGGAATGGCAGAAATTGCGAAGTTCGTCAGGAGGGAGCATTAGTGAACATGGATTTTCAAACTTCCCCACAAGTTGA 2499 0.4338 MLLVSPPSLPWVVGESREIFRLESINSSELKMGLQLIILLFKLHLVFSAPQLHEHRATNLHHSRSHSSIALLPSQPSSRVPASIAIPPSKSLPHGSVDSPISRHHKHYHSRRKFRNPTPTYNHGGHSVFPAQPPFPAPKTRNLPAQSRAFSSVPLNAPSPSPRVLPLHSSSKHMKNPSPSTVLSLPPPPPNDDCMSVTCSEPLTYTPSGSPCGCVWPIQVKLDLGIAIYKFFPLVSKLAEDIAASASLNRNQVRIVGADAPHHQLEKTNVLINLVPEGVNFDDATAFSIYKKFWHKEILTDASLFGSYEVLYVHYAGLPPSPPSSPSSVSGMDDVPYPGYDYNGTIMKPLGVDVPVNEKHGTSERGSMIIIIVLSCITLSVLFIGAAWLYLLKCGSCVQHPEHFPDDSILSSSKPSGAIKSLTYGSIPGSRSMSFSSGTIIYTGSVRTFTLNEMDKATNNFDALRIIGEGGFGLVYKGVLHDGRDVAVKILKRYDYHGGREFLAEVEMLSHLHHRNLVKLIGICMENQTRCLIYELIPNGSVESHLHGADKKTSPLDWNARMKIALGAARGLAYLHEDSNPCVIHRDFKASNILLEHDFTPKIADFGLARTALDEGTKHISTHVMGTFGYLAPEYAMTGHLLVKSDVYSYGVVLVELLTGRKPVDLSQPPGQENLVAWVRPLLTSKEGLQTIIDPVLESNVSFETVVKVAAIASTCVQPEVSQRPFMGEVVQALKLVCCEFDDTSIMRSRSFHEESLLIDGDGKFSGEMMGFQTLTESKLLSPLSGQGFESFRRHSASEPLTTEKNRKEWQKLRSSSGGSISEHGFSNFPTS 832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele41g0972 832 SUPERFAMILY Protein kinase-like (PK-like) 440 734 IPR011009 -
Lele41g0972 832 ProSiteProfiles Protein kinase domain profile. 461 737 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele41g0972 832 Gene3D Transferase(Phosphotransferase) domain 1 537 750 - -
Lele41g0972 832 Pfam Protein tyrosine and serine/threonine kinase 464 734 IPR001245 GO:0004672|GO:0006468
Lele41g0972 832 FunFam Receptor-like serine/threonine-protein kinase ALE2 537 753 - -
Lele41g0972 832 MobiDBLite consensus disorder prediction 797 812 - -
Lele41g0972 832 FunFam receptor-like serine/threonine-protein kinase ALE2 434 536 - -
Lele41g0972 832 ProSitePatterns Serine/Threonine protein kinases active-site signature. 583 595 IPR008271 GO:0004672|GO:0006468
Lele41g0972 832 MobiDBLite consensus disorder prediction 87 188 - -
Lele41g0972 832 MobiDBLite consensus disorder prediction 144 180 - -
Lele41g0972 832 MobiDBLite consensus disorder prediction 813 832 - -
Lele41g0972 832 CDD STKc_IRAK 467 735 - -
Lele41g0972 832 PANTHER OS01G0750732 PROTEIN 186 757 - -
Lele41g0972 832 ProSitePatterns Protein kinases ATP-binding region signature. 467 489 IPR017441 GO:0005524
Lele41g0972 832 MobiDBLite consensus disorder prediction 792 832 - -
Lele41g0972 832 Gene3D Phosphorylase Kinase; domain 1 433 536 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele41g0972 Lele-ChrLele41 19186723 19190421 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele41g0972 191 825 Receptor kinase-like Gene Family AT5G56890 56.595 0.0 700
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Lele41g0972 PK_Tyr_Ser-Thr 3.7e-48 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele38g0277 38 2201820 2203780 Lele41g0972 41 19186723 19190421 CCT
Lele39g1131 39 19806236 19810826 Lele41g0972 41 19186723 19190421 CCT
Lele40g0263 40 2096905 2103857 Lele41g0972 41 19186723 19190421 CCT
Lele41g0972 41 19186723 19190421 Lele43g0424 43 3736594 3740295 hybridization
Lele41g0972 41 19186723 19190421 Lele44g0416 44 3071895 3075862 hybridization