Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele41g0937 ATGGATGGCCTTCTTCCCTGGGATACTTGTCAATTTGTCTCCAATATGCCTATCTTTGAAGAGGAAGCTGCAGGCTACTCCATGCCTAACTTGGATTATCAAGTGCGAGAGACGCAGAATAAAACAGATCATCACCATCATCTTTATTCAGCTTTTGATGATGTTGTGCCAGATTATTTCGACACCGATGTGGCCGATGACCACCGGCAACAACAACTCATCGATGGCAACAGAGACGACGACGGAAATATTTCCATGATTCTATCTGATAGCTATAGAAGAAACACATCGAGCTTCAACAACAATGTGAGTTCAGTTTCCTCTGGTGAATCTCAGAAGAGTGATAACGCTTCTGCAGCTTCTGGTGGTAGGAGAAAGAACAAAGACGACGTCGTTCAGTGTCACGTCGATGAAATTCAAGAAGCTAATAAGCCTAATCATGCAAAAAGGAGTTTTAAGCTCATTTCAGAAAATAACAATGCATCAAAACCCAAGAAAGCTATATGGGAACACAACTTTTCATCTTCTTCAAGCATAAATTTTCAGCAGCCAAACTCAAGCATATCATTCAATTCCAGTATTAGACAAGAGCCTGATCAAGAGGCCATAGCACAAATGAAGGAGATGATATATAGGGCGGCAGCTTTCAGGCCTGTGAACTTAGGGTTGGAGGCAGTGGAAAAGCCAAGAAGGAAGAATGTGAGAATATCATCAGATCCACAGACTGTAGCAGCGAGGCAAAGGAGAGAGAGAATCAGTGAGAGAATTAGGGTTTTGCAGAAGATAGTTCCTGGTGGAAGCAAGATGGACACAGCTTCAACGCTTGATGAAGCTGCAAATTATCTCAAGTTTCTCAGGTCACAGGTCAAAGCATTGGAAAGTCTAGGGGACAAGGTATTAAATGAAGGACGAAATTCCAACTTGATCAGGATCACATGA 939 0.4239 MDGLLPWDTCQFVSNMPIFEEEAAGYSMPNLDYQVRETQNKTDHHHHLYSAFDDVVPDYFDTDVADDHRQQQLIDGNRDDDGNISMILSDSYRRNTSSFNNNVSSVSSGESQKSDNASAASGGRRKNKDDVVQCHVDEIQEANKPNHAKRSFKLISENNNASKPKKAIWEHNFSSSSSINFQQPNSSISFNSSIRQEPDQEAIAQMKEMIYRAAAFRPVNLGLEAVEKPRRKNVRISSDPQTVAARQRRERISERIRVLQKIVPGGSKMDTASTLDEAANYLKFLRSQVKALESLGDKVLNEGRNSNLIRIT 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele41g0937 312 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 88 298 IPR045843 GO:0003700|GO:0006355
Lele41g0937 312 MobiDBLite consensus disorder prediction 99 129 - -
Lele41g0937 312 Coils Coil 275 295 - -
Lele41g0937 312 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 236 285 IPR011598 GO:0046983
Lele41g0937 312 Gene3D - 241 306 IPR036638 GO:0046983
Lele41g0937 312 MobiDBLite consensus disorder prediction 99 121 - -
Lele41g0937 312 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 242 294 IPR036638 GO:0046983
Lele41g0937 312 SMART finulus 242 291 IPR011598 GO:0046983
Lele41g0937 312 Pfam Helix-loop-helix DNA-binding domain 246 285 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele41g0937 Lele-ChrLele41 18914978 18916444 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele41g0937 125 299 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 61.714 4.47e-60 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele41g0937 HLH 1.4e-06 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele41g0937 41 18914978 18916444 Lele43g0460 43 4029250 4030859 hybridization
Lele41g0937 41 18914978 18916444 Lele44g0449 44 3363998 3365029 hybridization