Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele41g0919 ATGGGGAAGGCCTCGAGGTGGTTGAAGGGCTTGCTGGGGATGAAGAAAGAGAAGGACCACCACCACCACCACCGCATCGACAATTCTGGTTCCTTGGTTTCTGACAAGAAGGAAAAGAAACGATGGAGTTTTGCTAAGTCAGGCAAAGATTCCGATTCTGTTACCAGTCAACCTCGATTTCCACCTCCTGATTCGACCGATTCTTGGTATAGATCCTATATGTTGGAAACAGAGAAAGAGCAGAACAAGCATGCAATTGCGGTGGCAGCTGCGACCGCCGCAGCAGCCGATGCTGCTGTCGCCGCAGCTCAGGCCGCCGTTGCGGTCGTAAGACTCACCAGCCACGGCAGAGGAACTCTGTTTAGTGGGAGTCGAGAAAAATGGGCGGCAGTTAAGATTCAAACCGTTTTCAGAGGCTATTTGGCGAGGAAGGCTTTAAGAGCTTTGAAAGGATTGGTTAAGATTCAAGCTTTGGTTCGAGGCTTTCTTGTTCGAAAGCGAGCTACCGCAACTCTGCACAGCATGCAAGCTCTGATCAGAGCTCAGACGGCAGTTCGATCACAGAGAGCTCGCCGTTCCATTAGCAAAGAAAATCGAACTAGAAAATCAATGGATCGAGTTGATGAGACAAGAAGTGAGATACACAGTAAAAGGTTATCAACATCGTATGAACAATCCTTCAATGGCTACGACGAGAGTCCCAAAATTGTTGAGATTGATACATACAGGACTCAGTCGAGATCCAGGAGAACAATCGAGACGACGTTTTCAGAATGTGGAGACGAAACACCGTATCAAACGACGCCGTTCCCTGACAGTAAGCACCTTCAGGACTTGGAGTGGTGCTTTACCGGCGACGAGTGCAAATTCTCGACGGCTCAGAGCACTCCTCGTTTCGCAAACAGCGCGCGTTCTCATAACGCGCCTCCGACTCCGGCGAAGAGTGTGTGCGGGGAGACTTTTGGCGGGGCGTACTATAATTTCCCTAACTACATGGCGAATACGCAGTCGTTTAGGGCGAAAGTGAGGTCCCAGAGTGCTCCGAAACAGAGGCCGGAGCAGAAGAAGAGGCTTTCGTTGAATGAGATAATGGCGGCGAGGAACAGCATAAGCAGCGTTAGAATGCAGAGGTCGTCTTGTTCTCAAGTCCAAGAGGAGTCATGGAATTTCTGA 1173 0.5004 MGKASRWLKGLLGMKKEKDHHHHHRIDNSGSLVSDKKEKKRWSFAKSGKDSDSVTSQPRFPPPDSTDSWYRSYMLETEKEQNKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSHGRGTLFSGSREKWAAVKIQTVFRGYLARKALRALKGLVKIQALVRGFLVRKRATATLHSMQALIRAQTAVRSQRARRSISKENRTRKSMDRVDETRSEIHSKRLSTSYEQSFNGYDESPKIVEIDTYRTQSRSRRTIETTFSECGDETPYQTTPFPDSKHLQDLEWCFTGDECKFSTAQSTPRFANSARSHNAPPTPAKSVCGETFGGAYYNFPNYMANTQSFRAKVRSQSAPKQRPEQKKRLSLNEIMAARNSISSVRMQRSSCSQVQEESWNF 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele41g0919 390 ProSiteProfiles IQ motif profile. 174 203 IPR000048 GO:0005515
Lele41g0919 390 MobiDBLite consensus disorder prediction 190 217 - -
Lele41g0919 390 Pfam IQ calmodulin-binding motif 128 147 IPR000048 GO:0005515
Lele41g0919 390 Pfam IQ calmodulin-binding motif 153 167 IPR000048 GO:0005515
Lele41g0919 390 Pfam Protein of unknown function (DUF4005) 296 378 IPR025064 -
Lele41g0919 390 SMART iq_5 148 169 IPR000048 GO:0005515
Lele41g0919 390 SMART iq_5 125 147 IPR000048 GO:0005515
Lele41g0919 390 ProSiteProfiles IQ motif profile. 150 177 IPR000048 GO:0005515
Lele41g0919 390 MobiDBLite consensus disorder prediction 48 63 - -
Lele41g0919 390 ProSiteProfiles IQ motif profile. 126 154 IPR000048 GO:0005515
Lele41g0919 390 PANTHER IQ-DOMAIN 5-RELATED 1 361 - -
Lele41g0919 390 MobiDBLite consensus disorder prediction 189 217 - -
Lele41g0919 390 Gene3D - 68 152 - -
Lele41g0919 390 MobiDBLite consensus disorder prediction 1 68 - -
Lele41g0919 390 MobiDBLite consensus disorder prediction 23 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele41g0919 Lele-ChrLele41 18691179 18692682 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele41g0919 1 375 IQD Protein Family AT3G16490 57.841 3.34e-115 339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele41g0919 41 18691179 18692682 Lele43g0489 43 4442025 4443527 hybridization
Lele41g0919 41 18691179 18692682 Lele44g0458 44 3446583 3448069 hybridization