Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele41g0917 ATGAATGGTAGGTCAAGAAACGAGGAGGTGTCTCCTCAGCTGCTGGATTTGATCCCAACAGAACGAGAGTGGCATGAAAACAGAGATGAAGAGAGCAAACTTGAGCTTAGACTTGGTCCACCTGGTGAAGAAGACGCATCTCTACTCTCTCTTGGTTACTTCCCAGCCTCCATTAATGGAAGCCACACCCAGAAAAATGTGTCTTCTTCTCCTTGGGCTTCTTCTGCAGGCTACCAGGAGAAGAAGAAGACACAGAACATTAATCAACACAAGGGAGTTTCATCATCATTCCTACAACAGCCTCAACCCTCTTCTGCAAATACAGCTGTACCCAACAGCTCTCAGAAAAGAACTGCTCCTGGTCCAGTAGTGGGTTGGCCTCCAATTCGTTCATTTAGGAAGAACCTTGCAAGCAGTAGCTCGTCTAAGGTTGTTCTTGAAAATGAATCTCAGAATCAGCATCATGTGGTTGAAGATAAGGTTGCTGGGAAGAAACCTGTGGCTGACAACAACAACAACAACAACAACGTTGTTGTTGGTAATAAAGGCCTGTTTGTGAAGATCAACATGGATGGAGTTCCCATAGGCAGAAAAGTGGACCTTAATGCTTACGATAGCTATGAAAAACTCTCCTCTGCTGTTGATGAACTCTTTAGAGGCCTCCTTGCTGCTCAAAGAGATTCCTCTGGTGGTGGTGGTGCTGGGATTCAGAACAAACCAGAAGAAGAGAAAGCCATCACAGGTTTATTGGATGGAAGTGGAGAATACACTCTGGTTTATGAGGATAATGAAGGAGACAGGATGCTTGTTGGGGATGTGCCATGGCACATGTTCGTGTCAACAGTGAGGAGGCTGCGTGTTCTGAAGAGCTCCGAGCTCTCTGCTTTTACTCTTGGTAGTAAGCAGCCAGACAAGAAGACCGCTTGA 927 0.4595 MNGRSRNEEVSPQLLDLIPTEREWHENRDEESKLELRLGPPGEEDASLLSLGYFPASINGSHTQKNVSSSPWASSAGYQEKKKTQNINQHKGVSSSFLQQPQPSSANTAVPNSSQKRTAPGPVVGWPPIRSFRKNLASSSSSKVVLENESQNQHHVVEDKVAGKKPVADNNNNNNNVVVGNKGLFVKINMDGVPIGRKVDLNAYDSYEKLSSAVDELFRGLLAAQRDSSGGGGAGIQNKPEEEKAITGLLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVRRLRVLKSSELSAFTLGSKQPDKKTA 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele41g0917 308 Pfam AUX/IAA family 34 295 IPR033389 -
Lele41g0917 308 ProSiteProfiles PB1 domain profile. 183 290 IPR000270 GO:0005515
Lele41g0917 308 MobiDBLite consensus disorder prediction 59 119 - -
Lele41g0917 308 SUPERFAMILY CAD & PB1 domains 181 287 - -
Lele41g0917 308 Gene3D - 178 301 - -
Lele41g0917 308 MobiDBLite consensus disorder prediction 59 128 - -
Lele41g0917 308 FunFam Auxin-responsive protein 179 301 - -
Lele41g0917 308 MobiDBLite consensus disorder prediction 19 40 - -
Lele41g0917 308 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 31 293 IPR003311 GO:0005634|GO:0006355
Lele41g0917 308 MobiDBLite consensus disorder prediction 1 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele41g0917 Lele-ChrLele41 18675546 18678543 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele41g0917 187 301 B3 DNA Binding Superfamily AT4G23980 32.174 1.53e-13 69.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lele41g0917 AUX_IAA 2.7e-70 CL0072