Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lele41g0916 ATGATTTTTTCCTGGAGACCTCACTTGTATTTGCTTCACTTTCTTCTCTTCGTTCTTCACCTCCACTCCCTTTCTTCGGACACACCACCCTTGGATTGTAAGGACACAACTCGCGTCTGCACTTCTTTCTTGGCCTTTAAGCCTCAACCAAATCAAACCTTAGACTTAGTTCAGAGCATGTTTGATGTATTGCCTAAAGACATTACCATTGAAGGCAACGACCGGGACTACATATTCATAAAAAAGAACTGTTCTTGTGCTGCTGGTACAAACAAATACGTATCCAGCACCACTTATACTGTAAAATCCAATCAAGGGTTGGTGTATGATTTAGTGATGAAGGCTTATGATGGGCTTGGCTTCTTGCCCAAAACAACCAGGAGGGCAGAAAACGGCGCCGTTACAACATTGAAGTTGTTTTGTGGTTGCTCCAGTGGACCCTGGAACTATATGATGACTTATGTGATGAGAGAACGTGATAGCATTGAATCTCTTGCGAGTCGGTTTGGAGTTAGTATGGATAGTATAGAGACAGTAAATGGCATCAACAATCCTGATAATATCACTGTGGGTTCGCTGTATTATATACCTCTTAATTCGGTTCCTGGTGAGCCATATACCCAGAAGAATGATACTTCTGCAGCTCCTGTTCCTGCCCCTTCTATTGACAATGCTTCTGCCAGTCAAGTCAGTCATGCTCATGCACCCTATGTATGGATCGTTGGGGGTTTAGGAATTGGTCTTGTCCTGATAATATTAAGCATAATTCTTTATTTCTGTGTGAGATCGTCCAATTGTTTTGCTGAAGCAAGCACAAGTCATGAAAAAGATGTTGAAGGCAAGATCTCTCACAAATTTCAAATCCTTCAAAATCCAAGTTTTTGCTGTGGTTCAGGAAGGTACGTACAGGGCAAACCCGTAGAACAGAGGCAATCCGATCGTGAATCCAACAACAACCAAATTACTGCTCCCAAAGTTTCAACTTTGGGGATTGATGTCTTTGAAGTGGAGAACACTGTTGTCTTCACATACGAAGAGATTTTTTCTGCAACTGTTGATTTCTCTGATTCAAATCTACTTGGGCATGGTATTTATGGTTCTGTTTATTATGGCTTCCTTCGTGACCAGGAGGTTGCTATTAAAAGAATGACTGCTACAAAAACTAAAGAATTCTTGTCAGAGATGAAGGTCCTAGGCAAGGTTCATCATGCAAATCTGGTAGAATTGATCGGCTATGCTGCTAGTCATGATGAACTTTACCTTATTTATGAATACGCCCAGAAGGGTTCACTTGGAAGCCATTTGCATGATCAACTGAGTAAGGGTTCTTCCTCACTCTCTTGGATCATGAGGGTCCAGATAGCACTTGATGCTGCTAGGGGTCTTGAGTACATACATGAGCACACCAAAACCAATTATGTCCATAGAGATATCAAGACAAGCAACATCTTACTTGATGCTTCCTTCAGAGCAAAGATTTCAGATTTTGGGTTAGCAAAACTAATTGGGAAAGCAAATGAAGAAGAAATTAGTGCCACCAAAGTTGTTGGCACATATGGTTATCTTGCACCAGAATACTTGAGTGATGGCCGTGCAACGACCAAAAGTGATGTCTATGCATTTGGCATTGTTCTTTTTGAGATAATATCAGGGAAGGAGGCCACTATTCGGGCAAAAGGCAAAATGTCAAAAAATCCTGAGAGACGTTCTCTTGTATCTATTATGTTGGCAGCTCTTAGGGACTCACCTGATTCAATGAGTATGTCTTGTTTGAGAAATCATATTGATCCTAATATGATGGACTTGTATCCCCATGATTGTGTATTTAAGATGGCTATGCTGGCAAAGCAATGTGTGGATGATGATCCCATCTTACGACCTGATATGCAGCAAGTTGTTATTTCGCTCTCACAGATCCTACTGTCTTCTATTGAGTGGGAAGCTACTCTAGCAGGGAACAGCCAAGTATTCAGTGGCCTTGCTCAAGGAAGATAG 1995 0.4145 MIFSWRPHLYLLHFLLFVLHLHSLSSDTPPLDCKDTTRVCTSFLAFKPQPNQTLDLVQSMFDVLPKDITIEGNDRDYIFIKKNCSCAAGTNKYVSSTTYTVKSNQGLVYDLVMKAYDGLGFLPKTTRRAENGAVTTLKLFCGCSSGPWNYMMTYVMRERDSIESLASRFGVSMDSIETVNGINNPDNITVGSLYYIPLNSVPGEPYTQKNDTSAAPVPAPSIDNASASQVSHAHAPYVWIVGGLGIGLVLIILSIILYFCVRSSNCFAEASTSHEKDVEGKISHKFQILQNPSFCCGSGRYVQGKPVEQRQSDRESNNNQITAPKVSTLGIDVFEVENTVVFTYEEIFSATVDFSDSNLLGHGIYGSVYYGFLRDQEVAIKRMTATKTKEFLSEMKVLGKVHHANLVELIGYAASHDELYLIYEYAQKGSLGSHLHDQLSKGSSSLSWIMRVQIALDAARGLEYIHEHTKTNYVHRDIKTSNILLDASFRAKISDFGLAKLIGKANEEEISATKVVGTYGYLAPEYLSDGRATTKSDVYAFGIVLFEIISGKEATIRAKGKMSKNPERRSLVSIMLAALRDSPDSMSMSCLRNHIDPNMMDLYPHDCVFKMAMLAKQCVDDDPILRPDMQQVVISLSQILLSSIEWEATLAGNSQVFSGLAQGR 664
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lele41g0916 664 SMART serkin_6 354 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele41g0916 664 Gene3D Transferase(Phosphotransferase) domain 1 427 650 - -
Lele41g0916 664 FunFam PTI1-like tyrosine-protein kinase 3 426 650 - -
Lele41g0916 664 ProSitePatterns Protein kinases ATP-binding region signature. 360 381 IPR017441 GO:0005524
Lele41g0916 664 SUPERFAMILY LysM domain 152 197 IPR036779 -
Lele41g0916 664 SUPERFAMILY Protein kinase-like (PK-like) 333 636 IPR011009 -
Lele41g0916 664 ProSiteProfiles Protein kinase domain profile. 354 641 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele41g0916 664 ProSitePatterns Serine/Threonine protein kinases active-site signature. 473 485 IPR008271 GO:0004672|GO:0006468
Lele41g0916 664 CDD LysM 153 196 IPR018392 -
Lele41g0916 664 Pfam LysM domain 154 192 IPR018392 -
Lele41g0916 664 Gene3D LysM domain 147 207 IPR036779 -
Lele41g0916 664 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 59 658 IPR044812 GO:0019199|GO:0045087
Lele41g0916 664 FunFam Kinase family protein 329 425 - -
Lele41g0916 664 Pfam Protein tyrosine and serine/threonine kinase 358 634 IPR001245 GO:0004672|GO:0006468
Lele41g0916 664 SMART LysM_2 153 197 IPR018392 -
Lele41g0916 664 ProSiteProfiles LysM domain profile. 152 196 IPR018392 -
Lele41g0916 664 CDD STKc_IRAK 360 639 - -
Lele41g0916 664 Gene3D Phosphorylase Kinase; domain 1 329 425 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lele41g0916 Lele-ChrLele41 18656620 18661589 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele41g0916 30 664 Receptor kinase-like Gene Family AT1G51940 65.379 0.0 791
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Lele41g0916 PK_Tyr_Ser-Thr 4.3e-50 CL0016
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele41g0916 41 18656620 18661589 Lele43g0492 43 4475585 4480532 hybridization
Lele41g0916 41 18656620 18661589 Lele44g0461 44 3481387 3486212 hybridization