LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele41g0916	ATGATTTTTTCCTGGAGACCTCACTTGTATTTGCTTCACTTTCTTCTCTTCGTTCTTCACCTCCACTCCCTTTCTTCGGACACACCACCCTTGGATTGTAAGGACACAACTCGCGTCTGCACTTCTTTCTTGGCCTTTAAGCCTCAACCAAATCAAACCTTAGACTTAGTTCAGAGCATGTTTGATGTATTGCCTAAAGACATTACCATTGAAGGCAACGACCGGGACTACATATTCATAAAAAAGAACTGTTCTTGTGCTGCTGGTACAAACAAATACGTATCCAGCACCACTTATACTGTAAAATCCAATCAAGGGTTGGTGTATGATTTAGTGATGAAGGCTTATGATGGGCTTGGCTTCTTGCCCAAAACAACCAGGAGGGCAGAAAACGGCGCCGTTACAACATTGAAGTTGTTTTGTGGTTGCTCCAGTGGACCCTGGAACTATATGATGACTTATGTGATGAGAGAACGTGATAGCATTGAATCTCTTGCGAGTCGGTTTGGAGTTAGTATGGATAGTATAGAGACAGTAAATGGCATCAACAATCCTGATAATATCACTGTGGGTTCGCTGTATTATATACCTCTTAATTCGGTTCCTGGTGAGCCATATACCCAGAAGAATGATACTTCTGCAGCTCCTGTTCCTGCCCCTTCTATTGACAATGCTTCTGCCAGTCAAGTCAGTCATGCTCATGCACCCTATGTATGGATCGTTGGGGGTTTAGGAATTGGTCTTGTCCTGATAATATTAAGCATAATTCTTTATTTCTGTGTGAGATCGTCCAATTGTTTTGCTGAAGCAAGCACAAGTCATGAAAAAGATGTTGAAGGCAAGATCTCTCACAAATTTCAAATCCTTCAAAATCCAAGTTTTTGCTGTGGTTCAGGAAGGTACGTACAGGGCAAACCCGTAGAACAGAGGCAATCCGATCGTGAATCCAACAACAACCAAATTACTGCTCCCAAAGTTTCAACTTTGGGGATTGATGTCTTTGAAGTGGAGAACACTGTTGTCTTCACATACGAAGAGATTTTTTCTGCAACTGTTGATTTCTCTGATTCAAATCTACTTGGGCATGGTATTTATGGTTCTGTTTATTATGGCTTCCTTCGTGACCAGGAGGTTGCTATTAAAAGAATGACTGCTACAAAAACTAAAGAATTCTTGTCAGAGATGAAGGTCCTAGGCAAGGTTCATCATGCAAATCTGGTAGAATTGATCGGCTATGCTGCTAGTCATGATGAACTTTACCTTATTTATGAATACGCCCAGAAGGGTTCACTTGGAAGCCATTTGCATGATCAACTGAGTAAGGGTTCTTCCTCACTCTCTTGGATCATGAGGGTCCAGATAGCACTTGATGCTGCTAGGGGTCTTGAGTACATACATGAGCACACCAAAACCAATTATGTCCATAGAGATATCAAGACAAGCAACATCTTACTTGATGCTTCCTTCAGAGCAAAGATTTCAGATTTTGGGTTAGCAAAACTAATTGGGAAAGCAAATGAAGAAGAAATTAGTGCCACCAAAGTTGTTGGCACATATGGTTATCTTGCACCAGAATACTTGAGTGATGGCCGTGCAACGACCAAAAGTGATGTCTATGCATTTGGCATTGTTCTTTTTGAGATAATATCAGGGAAGGAGGCCACTATTCGGGCAAAAGGCAAAATGTCAAAAAATCCTGAGAGACGTTCTCTTGTATCTATTATGTTGGCAGCTCTTAGGGACTCACCTGATTCAATGAGTATGTCTTGTTTGAGAAATCATATTGATCCTAATATGATGGACTTGTATCCCCATGATTGTGTATTTAAGATGGCTATGCTGGCAAAGCAATGTGTGGATGATGATCCCATCTTACGACCTGATATGCAGCAAGTTGTTATTTCGCTCTCACAGATCCTACTGTCTTCTATTGAGTGGGAAGCTACTCTAGCAGGGAACAGCCAAGTATTCAGTGGCCTTGCTCAAGGAAGATAG	1995	0.4145	MIFSWRPHLYLLHFLLFVLHLHSLSSDTPPLDCKDTTRVCTSFLAFKPQPNQTLDLVQSMFDVLPKDITIEGNDRDYIFIKKNCSCAAGTNKYVSSTTYTVKSNQGLVYDLVMKAYDGLGFLPKTTRRAENGAVTTLKLFCGCSSGPWNYMMTYVMRERDSIESLASRFGVSMDSIETVNGINNPDNITVGSLYYIPLNSVPGEPYTQKNDTSAAPVPAPSIDNASASQVSHAHAPYVWIVGGLGIGLVLIILSIILYFCVRSSNCFAEASTSHEKDVEGKISHKFQILQNPSFCCGSGRYVQGKPVEQRQSDRESNNNQITAPKVSTLGIDVFEVENTVVFTYEEIFSATVDFSDSNLLGHGIYGSVYYGFLRDQEVAIKRMTATKTKEFLSEMKVLGKVHHANLVELIGYAASHDELYLIYEYAQKGSLGSHLHDQLSKGSSSLSWIMRVQIALDAARGLEYIHEHTKTNYVHRDIKTSNILLDASFRAKISDFGLAKLIGKANEEEISATKVVGTYGYLAPEYLSDGRATTKSDVYAFGIVLFEIISGKEATIRAKGKMSKNPERRSLVSIMLAALRDSPDSMSMSCLRNHIDPNMMDLYPHDCVFKMAMLAKQCVDDDPILRPDMQQVVISLSQILLSSIEWEATLAGNSQVFSGLAQGR	664

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele41g0916	664	SMART	serkin_6	354	591	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele41g0916	664	Gene3D	Transferase(Phosphotransferase) domain 1	427	650	-	-
	Lele41g0916	664	FunFam	PTI1-like tyrosine-protein kinase 3	426	650	-	-
	Lele41g0916	664	ProSitePatterns	Protein kinases ATP-binding region signature.	360	381	IPR017441	GO:0005524
	Lele41g0916	664	SUPERFAMILY	LysM domain	152	197	IPR036779	-
	Lele41g0916	664	SUPERFAMILY	Protein kinase-like (PK-like)	333	636	IPR011009	-
	Lele41g0916	664	ProSiteProfiles	Protein kinase domain profile.	354	641	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele41g0916	664	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	473	485	IPR008271	GO:0004672\|GO:0006468
	Lele41g0916	664	CDD	LysM	153	196	IPR018392	-
	Lele41g0916	664	Pfam	LysM domain	154	192	IPR018392	-
	Lele41g0916	664	Gene3D	LysM domain	147	207	IPR036779	-
	Lele41g0916	664	PANTHER	CHITIN ELICITOR RECEPTOR KINASE 1-RELATED	59	658	IPR044812	GO:0019199\|GO:0045087
	Lele41g0916	664	FunFam	Kinase family protein	329	425	-	-
	Lele41g0916	664	Pfam	Protein tyrosine and serine/threonine kinase	358	634	IPR001245	GO:0004672\|GO:0006468
	Lele41g0916	664	SMART	LysM_2	153	197	IPR018392	-
	Lele41g0916	664	ProSiteProfiles	LysM domain profile.	152	196	IPR018392	-
	Lele41g0916	664	CDD	STKc_IRAK	360	639	-	-
	Lele41g0916	664	Gene3D	Phosphorylase Kinase; domain 1	329	425	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele41g0916	Lele-ChrLele41	18656620	18661589	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele41g0916	30	664	Receptor kinase-like Gene Family	AT1G51940	65.379	0.0	791

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LysM	Lele41g0916		PK_Tyr_Ser-Thr	4.3e-50	CL0016

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele41g0916	41	18656620	18661589	Lele43g0492	43	4475585	4480532	hybridization
	Lele41g0916	41	18656620	18661589	Lele44g0461	44	3481387	3486212	hybridization