Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele41g0915 ATGGCATCTCGCAGACAAATTGCTGCCATGAAACAATCCCTCTTTGATCAGGGATATCTAGATGAACAGTTCATTCAACTTGAGGAGCTGCAGGATGCTGCAAATCCAAACTTCGTTGAAGAAATTGTCACTCTTTATTACCGCGATTCCTCAAGACTTATATCAAACATAGAGCAAGCATTGGAGAGGAACCCACTGGAATTTAACAGGCTAGACTCTATGATGCATCAGTTCAAAGGAAGCAGCTCAAGCATCGGAGCCAAAAAGGTGAAAGCAGAGAGCACTCTGTTTAGGGAATATTGCGGGGCCGGAAATGCTGAGGGATGCAAGAGGAGCTTCCAACAACTGAAGAGAGAATATGCCACACTGAGAAAGAAGCTTGAAGCTTATTTTCAGGATGATGATGATGATCCTGTTTTCACTATATTTATGCAGCAAGCAAGGCAAGCTGGGAACTCTGAGGCAGCATGTCGCCCCAAAAATTTAGGACGTGGAATTCGAAGAAGTGGAGGATTCCATCTCCTTCAGATTTCATTTTTCTCTCTTGCCTTTGATTTTGGTTTATTGTCACTGGCCGGCCTCTACTGTCCCACAGTTCCCCTCTTTGTGATCGCTAGAAAACCAGCAGCAGAGGGCAATCTTCACAACCAGCCTTTTCCACTGCCACTGGACCGCTGAAGAGGCTTGGGGATTGCATTTGTGACAGCTCTGGTTTTTTGCCTTGCTGTTGGCAGAAGGAGGAGATTGACTTGTGCACTGACTCAGAAGAAGATTGACCTGTTAACAGCATGGTGGAATTACCTTCTTGGAGCTTTCAAGCCAGCGTGTAACATCTTAATCACATTCAATGATGGGAAAAGTCGAAAGCAGGTTCCATTCAAAAAAGAGAATGGCCAAACAGTCACTGCCCCACTTTTCCAAAGTCAAGAAAACATTGCTGGGAAGATTATAATCGAGCCAATGCAAGGGAAAAAGATTGACCACAATGGCATAAAAGTCGAATTACTGGGACAGATAGAGATGTATTTTGACAGAGGAAACTTTTATGACTTTACTTCCCTTGTACGAGAACTAGATGTTCCTGGAGATATTTATGAGAAGAAAACTTATCCATTTGAGTTTTACACAGTTGAAATGCCATATGAAACATATAATGGGGTAAATGTCAGGCTTAGGTATGTTTTGAAAGTGACCGTCAGTCGTGGTTATGCAGGAAGCATAATAGAGTACCAGGATTTTGTGGTCCGTAACTATTCTCCACCTCCATCAATTAACAATAGCATCAAGATGGAAGTTGGAATTGAAGATTGCCTACACATTGAATTTGAATACAACAAAAGCAAGTATCATCTGAAAGACGTCATCATTGGCAAGATATATTTTCTCCTGGTAAGAATCAAGATAAAAAATATGGACCTTGAGATTAAGCGTCGGGAATCAACAGGTTCAGGGACCAACACCCATGTTGAGACAGAAACATTGGCAAAATTTGAGTTGATGGATGGTGCTCCTGTCCGAGGTGAGTCAATACCAATCAGACTGTTCCTCAGTCCCTATGAGCTGACACCAACTCATCGCAACATTAATAACAAATTCAGTGTGAAGTACTTCTTAAATCTGGTGTTGGTTGATGAAGAGGACAGGCGATACTTTAAGCAGCAGGAAATCACAATGTATAGGCTGCAAGAAGAAACTTCCTGA 1701 0.4221 MASRRQIAAMKQSLFDQGYLDEQFIQLEELQDAANPNFVEEIVTLYYRDSSRLISNIEQALERNPLEFNRLDSMMHQFKGSSSSIGAKKVKAESTLFREYCGAGNAEGCKRSFQQLKREYATLRKKLEAYFQDDDDDPVFTIFMQQARQAGNSEAACRPKNLGRGIRRSGGFHLLQISFFSLAFDFGLLSLAGLYCPTVPLFVIARKPAAEGNLHNQPFPLPLDRXRGLGIAFVTALVFCLAVGRRRRLTCALTQKKIDLLTAWWNYLLGAFKPACNILITFNDGKSRKQVPFKKENGQTVTAPLFQSQENIAGKIIIEPMQGKKIDHNGIKVELLGQIEMYFDRGNFYDFTSLVRELDVPGDIYEKKTYPFEFYTVEMPYETYNGVNVRLRYVLKVTVSRGYAGSIIEYQDFVVRNYSPPPSINNSIKMEVGIEDCLHIEFEYNKSKYHLKDVIIGKIYFLLVRIKIKNMDLEIKRRESTGSGTNTHVETETLAKFELMDGAPVRGESIPIRLFLSPYELTPTHRNINNKFSVKYFLNLVLVDEEDRRYFKQQEITMYRLQEETS 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele41g0915 566 ProSiteProfiles Histidine-containing phosphotransfer (HPt) domain profile. 35 130 IPR008207 GO:0000160
Lele41g0915 566 CDD HPT 39 121 IPR008207 GO:0000160
Lele41g0915 566 FunFam Vacuolar protein sorting-associated protein 26 421 566 - -
Lele41g0915 566 PANTHER VACUOLAR PROTEIN SORTING 26 RELATED 270 563 IPR028934 GO:0006886
Lele41g0915 566 FunFam Histidine-containing phosphotransfer protein 4 1 137 - -
Lele41g0915 566 Coils Coil 106 133 - -
Lele41g0915 566 FunFam vacuolar protein sorting-associated protein 26A 265 419 - -
Lele41g0915 566 Gene3D HPT domain 2 136 IPR036641 GO:0000160
Lele41g0915 566 Pfam Hpt domain 41 124 IPR008207 GO:0000160
Lele41g0915 566 Gene3D - 264 419 IPR014752 -
Lele41g0915 566 SUPERFAMILY Histidine-containing phosphotransfer domain, HPT domain 4 133 IPR036641 GO:0000160
Lele41g0915 566 Pfam Vacuolar protein sorting-associated protein 26 272 547 IPR028934 GO:0006886
Lele41g0915 566 Gene3D - 421 566 IPR014752 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele41g0915 Lele-ChrLele41 18644887 18654110 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele41g0915 41 18644887 18654110 Lele37g0368 37 3094571 3095062 CCT
Lele41g0915 41 18644887 18654110 Lele38g0345 38 2800898 2801386 CCT
Lele41g0915 41 18644887 18654110 Lele39g1059 39 19202897 19203388 CCT
Lele41g0915 41 18644887 18654110 Lele40g0324 40 2665740 2666225 CCT
Lele38g0331 38 2622252 2628895 Lele41g0915 41 18644887 18654110 CCT
Lele40g0311 40 2502857 2509419 Lele41g0915 41 18644887 18654110 CCT
Lele41g0915 41 18644887 18654110 Lele43g0493 43 4481572 4491294 hybridization
Lele41g0915 41 18644887 18654110 Lele44g0462 44 3488295 3496404 hybridization