Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele41g0913 ATGACTCGGCGGTGCTCTCACTGCGGCAATAACGGGCACAACTCCCGAACTTGTCCGTCCCGTGGTGGAGGTGCCGGCGGCGGAAGCGCTGGAGGTGTGAAGCTATTTGGTGTTAGACTCACCGATGGACCAATCATTAAAAAGAGCGCGAGCATGGGGAATCTCTCCGTCCATTACTATTCTTCTTCGACCGCTCCCCGATCACCAAATCCCGGGTCGCCGTGCTCTGACCCGCTCCGAGACCTGGGTCATGAGCAAGACGGGTGCTTGTCCGATGATCCCTCTCATGCCTCCAGTTCCGCGAACCGTCGTGGAGAAAAAAAGAAAGGTGTTCCATGGACTGAAGAAGAACATAAGATGTTTTTAATTGGTCTCCAGAAGCTGGGTAAAGGAGATTGGCGAGGCATATCTCGCAATTTTGTTGTGTCAAGGACTCCTACTCAAGTAGCAAGTCATGCCCAAAAGTACTTTATCAGGCAGAGCAACTCTACCCGGAGAAAAAGGCGTGCCAGTCTTTTTGACATTATTCCAGATGCGGCTTCAGATCCACCTTCGGTGCCGGAAGAACAACTATTACTGCCACCTTCTGAGAACTCACAACCTGGTAGCGCAAATTTCCAACCATCATTAGATCTCTCCCGCAAGTCAGAATTTGAACCCATGGAAACTAATTGTGAAGAAAATGTGGAAGAGCTCAATGAAACTATGGTTAGATCAAGTGAATTGACACCAGTGGCTAACGGATTCATGCCAACGTATGTACCTGTTGCATTTTCCTTATGGCCATCAAATGCTGCTCCCTTTGAAGAAGTTAAGGAAGCTGAGACAGCTCATCATGAGGTCCTTAAGCCAATCCCAGTCGTTCCTAAGGAACCAGTCAATGTTGATGAACTTGTTGGCATGTCTCAGCTTAGTTTGGGGGAAACACGAAAAGGTGATAGAGAGCCTTCCCCACTTTCTTTGAAGTTGCAGGGGGAGCCCTCAAGGCAATCAGCATTCCATGCAAATGCACCTGTTGGTGGTTCAGATTTAAACAATAGCAATAACAGTGCAATTCAAGCAGCTTAA 1068 0.4831 MTRRCSHCGNNGHNSRTCPSRGGGAGGGSAGGVKLFGVRLTDGPIIKKSASMGNLSVHYYSSSTAPRSPNPGSPCSDPLRDLGHEQDGCLSDDPSHASSSANRRGEKKKGVPWTEEEHKMFLIGLQKLGKGDWRGISRNFVVSRTPTQVASHAQKYFIRQSNSTRRKRRASLFDIIPDAASDPPSVPEEQLLLPPSENSQPGSANFQPSLDLSRKSEFEPMETNCEENVEELNETMVRSSELTPVANGFMPTYVPVAFSLWPSNAAPFEEVKEAETAHHEVLKPIPVVPKEPVNVDELVGMSQLSLGETRKGDREPSPLSLKLQGEPSRQSAFHANAPVGGSDLNNSNNSAIQAA 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele41g0913 355 MobiDBLite consensus disorder prediction 176 209 - -
Lele41g0913 355 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 105 161 IPR017930 -
Lele41g0913 355 ProSiteProfiles Zinc finger CCHC-type profile. 3 20 IPR001878 GO:0003676|GO:0008270
Lele41g0913 355 Pfam Myb-like DNA-binding domain 112 157 IPR001005 -
Lele41g0913 355 MobiDBLite consensus disorder prediction 1 28 - -
Lele41g0913 355 MobiDBLite consensus disorder prediction 1 18 - -
Lele41g0913 355 MobiDBLite consensus disorder prediction 340 355 - -
Lele41g0913 355 ProSiteProfiles Myb-like domain profile. 105 157 IPR001005 -
Lele41g0913 355 PANTHER TRANSCRIPTION FACTOR KUA1 3 287 - -
Lele41g0913 355 FunFam transcription factor MYB1R1 111 162 - -
Lele41g0913 355 SMART sant 109 159 IPR001005 -
Lele41g0913 355 MobiDBLite consensus disorder prediction 61 112 - -
Lele41g0913 355 SUPERFAMILY Homeodomain-like 107 162 IPR009057 -
Lele41g0913 355 MobiDBLite consensus disorder prediction 192 209 - -
Lele41g0913 355 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 108 160 IPR006447 GO:0003677
Lele41g0913 355 MobiDBLite consensus disorder prediction 306 355 - -
Lele41g0913 355 CDD SANT 112 157 IPR001005 -
Lele41g0913 355 Gene3D - 113 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele41g0913 Lele-ChrLele41 18636328 18639445 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lele41g0913 Myb_DNA-binding 1.8e-10 CL0123