Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele41g0901 ATGTTAATGGAAGTACCGGAGTGTTTTGTCGGTGGCTATTTCTCTGCAGGAGGAGATCAATTCTCTTCGGAGAAGCGCCATGGTGCTGATCATCAGAAGCTCGGTGAGCCCTTCGCCATTGACGACCTCCTTGACTTCTCCAACGCCGACGCTATGATCATGTCCGACGGTTTCTTCGATAATGCCGCCGGCAACTCCGCTGAATCATCCACTGTCGCAGCCGTTGACAGCTGTAATTCATCCGTTTCCGGCGGTGACAATCATTTCTCCTCCGGTTACGCTGGCTCCCGCGGCTTCGCCGATCCTCAATTATCTGGAGAACTCTGCGTTCCGTATGACGACTTGGCTGAACTGGAATGGCTATCGAACTTCGTGGAAGACTCGTTTTCGGTAGAAGATGAGCTAAAAACACTCCACCTTATCTCCGGCACCACTGCTTCCGGCGTCGGCACGAAACCTCAGACCCCAGAGTCCTCCTCTTCATCTGAAACACTTCCACCCTTCGCTGCCGACACCGGTCGAAACGCACCGATCTTCCATCCAGAAACTCCGCTTCCAGGTAAATCTCGGAGCAAGCGCAATCGTGCTGCCCCCGGGGATTGGTCTACGCGGCTCCTCTACCTGATCACCCCGACGGCCGTTTCGGAACAGACGCAAGCGAAGCCTGTGGCGGCTAAGAAAAGAGAGAGTTTGAATTCGGAGGACTCTACGGGTCGGAAATGCCTGCATTGCGCATCCGAGAAGACTCCACAATGGCGGACCGGACCAATGGGTCCGAAGACGCTGTGCAATGCTTGTGGAGTGCGCTACAAGTCCGGGAGGCTTGTGGCGGAGTACCGACCGGCGGCGAGCCCGACTTTTGTGTCGTCAAAGCACTCCAATTCGCACAGGAAGGTGATGGAGATGAGGAGGCAGAAGGAGATGCAGAGGCAGCATCAACAGCATCAATTGGTTAGCCAGAGTTCAATTTTCGGCGTTTCTCATGGCGGAGATGAGTTCTGGATCCCTCATCCCGGCGGTCCAGATTATAGGCACATGATCTAG 1044 0.5489 MLMEVPECFVGGYFSAGGDQFSSEKRHGADHQKLGEPFAIDDLLDFSNADAMIMSDGFFDNAAGNSAESSTVAAVDSCNSSVSGGDNHFSSGYAGSRGFADPQLSGELCVPYDDLAELEWLSNFVEDSFSVEDELKTLHLISGTTASGVGTKPQTPESSSSSETLPPFAADTGRNAPIFHPETPLPGKSRSKRNRAAPGDWSTRLLYLITPTAVSEQTQAKPVAAKKRESLNSEDSTGRKCLHCASEKTPQWRTGPMGPKTLCNACGVRYKSGRLVAEYRPAASPTFVSSKHSNSHRKVMEMRRQKEMQRQHQQHQLVSQSSIFGVSHGGDEFWIPHPGGPDYRHMI 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele41g0901 347 FunFam GATA transcription factor 231 316 - -
Lele41g0901 347 ProSitePatterns GATA-type zinc finger domain. 241 266 IPR000679 GO:0006355|GO:0043565
Lele41g0901 347 Gene3D - 236 320 IPR013088 GO:0006355|GO:0008270
Lele41g0901 347 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 235 297 - -
Lele41g0901 347 MobiDBLite consensus disorder prediction 144 168 - -
Lele41g0901 347 SMART GATA_3 235 285 IPR000679 GO:0006355|GO:0043565
Lele41g0901 347 PIRSF Txn_fac_GATA_plant 21 329 IPR016679 GO:0003677|GO:0005634|GO:0045893
Lele41g0901 347 PANTHER GATA TRANSCRIPTION FACTOR 26 314 - -
Lele41g0901 347 MobiDBLite consensus disorder prediction 144 197 - -
Lele41g0901 347 CDD ZnF_GATA 240 287 IPR000679 GO:0006355|GO:0043565
Lele41g0901 347 Pfam GATA zinc finger 241 274 IPR000679 GO:0006355|GO:0043565
Lele41g0901 347 ProSiteProfiles GATA-type zinc finger domain profile. 235 271 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele41g0901 Lele-ChrLele41 18539049 18540398 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele41g0901 36 347 C2C2-Gata Transcription Factor Family AT4G32890 46.130 1.60e-80 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lele41g0901 GATA 3.2e-14 CL0167