Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele41g0886 ATGCCTAGACTACTGCTAGAACATGATTACATAGGCTTATCAGAGAACCATTCCATGGACATCTCTGAAAAGAGTTCTCGTCTCAACTTGAACTTAAAGGAGACAGAGCTCAGACTTGGCCTTCCTGGTCGTGAGTCTCCAGAAAGAAAGTCATCAACAAATGTAATATCTCTGTTTGGGAAGGATTTGCAGAATACAAATGCTCTGAACAACAACGTTGTTGCTGGTTCCAAGAGAGTCTTCTCTGATGCCATCAAGGATGATGGATCTGATGACTCCCTTGTTGTTGGTTTTGAGGTTAAAAGAAATAATACCCACAAGGCTTCGCAATCTTCCAAACCAAGCCAAGATAAGAAGCCAGAAATTTCTGCAACAAACGACCATGGAAGTCCTCCTTGTGCAAACTTGACAAAGAACAAGGACGGAGAAGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGAAAATCAGAAGCAAGTGGTTGTCTTTATGTAAAAGTTAGTATGGATGGTGCTCCATATCTCAGAAAGGTTGATCTCAGAATGTACAACAACTATATGCAACTTTCTTCAGCTCTTGAGCAAATGTTCACCTGCTTCACCATTGGTGAATGCAAATCTGGGGTGAGTGATGAGAGCTCTTTGAGGGGTCTTGTTCATGTGTCAGAGTATGTTGTTACATATGAAGACAAGGATGGAGATTGGATGCTTGTTGGTGATGTGCCTTGGGAGTAA 735 0.4286 MPRLLLEHDYIGLSENHSMDISEKSSRLNLNLKETELRLGLPGRESPERKSSTNVISLFGKDLQNTNALNNNVVAGSKRVFSDAIKDDGSDDSLVVGFEVKRNNTHKASQSSKPSQDKKPEISATNDHGSPPCANLTKNKDGEEEEEEEEEEEEGKSEASGCLYVKVSMDGAPYLRKVDLRMYNNYMQLSSALEQMFTCFTIGECKSGVSDESSLRGLVHVSEYVVTYEDKDGDWMLVGDVPWE 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele41g0886 244 ProSiteProfiles PB1 domain profile. 162 244 IPR000270 GO:0005515
Lele41g0886 244 Coils Coil 133 153 - -
Lele41g0886 244 SUPERFAMILY CAD & PB1 domains 157 244 - -
Lele41g0886 244 MobiDBLite consensus disorder prediction 101 159 - -
Lele41g0886 244 MobiDBLite consensus disorder prediction 142 156 - -
Lele41g0886 244 MobiDBLite consensus disorder prediction 103 119 - -
Lele41g0886 244 Gene3D - 156 244 - -
Lele41g0886 244 Pfam AUX/IAA family 34 244 IPR033389 -
Lele41g0886 244 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 30 243 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele41g0886 Lele-ChrLele41 18437669 18438690 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele41g0886 62 243 B3 DNA Binding Superfamily AT4G23980 26.633 1.52e-06 47.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lele41g0886 AUX_IAA 8.6e-54 CL0072