Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele41g0850 ATGTATGGTGATAAAAACCATCATGGTTATGGCAATCCGAATCGTCAAAACCGTTGGGTTCGGAGTTCTCCATATTCTCAGCCGGTCACAAATGAGTATGTGGAAGATAATGATGATGATGAGGAGGAGGATGGAGAAGATGATGTGGAACTTTTAGGAGACGAGGAAGATGCTGATGATGCTGATCAGAGTAATAGTATTTATCTGCAAAATGATGTTGGTGACAATGATTATGATGAGGGTGATGATGATGGTAATGATGATACTTATGGTGATGATGATGGGGGTAAGAAGAAGAGTTATAAGAAGAGAGTTGAAGATGATTCAGAATGGCATCCGAAAAAGCGAAAGCTGAAAAGCTTGATTTCAGCTTATGAAGTTGCCCCTCTTTTGCCAGCAGCAGCAGCATCACCATCAGCTGCAGCTCACTCAGAACCAAAACCATATTTTGGCTCCAGGAATTCCCTTACTGACTGGACTCAACATGAGACATTTTTTCTTCTCGATGCTTGGGGGAACCGGTTTCTTCAACAAGGAAGGAAGAGTCTTCGGTCTGAGCAATGGCAAGAAGTTGCAGAAGAAGTATCAGAAGTTTCAAAAATTGAAAGGACAGATACTCAGTGTCGGAATCGTCTAGACACGTTAAAGAAAAAATACAAAAAAGAGAAAACTAAATTAGCAGAAATGGGTGGTGGATTGAGCAAATGGGTGTATTTCAAAAGGATAGATAAGCTGTTGTCTTCCCCTCCACAGCAAGCTGGTCTCTCTTGTGGTTTAGACTCAGGAGAGTATGTTTTTATGAACCCTAGAGTTTATTTGAACCGTGCAAATGGGTTAGATGAAATGAGGGATAGTCCAGGGAATTCAGAATATACTGGTGAAGATGAAGATTTATTATTAGGTGGACTTCATCCGAAGAAAATAAGGCATGGAAGAGGGGACGGTGATGAAACTTCCTTCAAATTGCTCGCTGAATCGATTCAGAAATTCGGCGAGATATATGAGAAGATTGAAAATAGTAGAAGGCAGCAGATGGTGGAGCTGGAAAAGATGAGAATGGATTTCCATAGAGAATTGGAAACACAGAAGAGGCAGATATTAGAGAGATTGCAAGGCGACATTGCAAAACTGGACCAGAGAGATAATGAGGATAATGATGATCCTGTAGAGAAGGATGAGTAA 1182 0.4086 MYGDKNHHGYGNPNRQNRWVRSSPYSQPVTNEYVEDNDDDEEEDGEDDVELLGDEEDADDADQSNSIYLQNDVGDNDYDEGDDDGNDDTYGDDDGGKKKSYKKRVEDDSEWHPKKRKLKSLISAYEVAPLLPAAAASPSAAAHSEPKPYFGSRNSLTDWTQHETFFLLDAWGNRFLQQGRKSLRSEQWQEVAEEVSEVSKIERTDTQCRNRLDTLKKKYKKEKTKLAEMGGGLSKWVYFKRIDKLLSSPPQQAGLSCGLDSGEYVFMNPRVYLNRANGLDEMRDSPGNSEYTGEDEDLLLGGLHPKKIRHGRGDGDETSFKLLAESIQKFGEIYEKIENSRRQQMVELEKMRMDFHRELETQKRQILERLQGDIAKLDQRDNEDNDDPVEKDE 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele41g0850 393 MobiDBLite consensus disorder prediction 1 109 - -
Lele41g0850 393 MobiDBLite consensus disorder prediction 33 62 - -
Lele41g0850 393 ProSiteProfiles Myb-like domain profile. 159 216 IPR001005 -
Lele41g0850 393 Coils Coil 334 365 - -
Lele41g0850 393 MobiDBLite consensus disorder prediction 371 393 - -
Lele41g0850 393 MobiDBLite consensus disorder prediction 75 90 - -
Lele41g0850 393 FunFam trihelix transcription factor ASIL2 159 221 - -
Lele41g0850 393 Pfam Myb/SANT-like DNA-binding domain 158 245 IPR044822 -
Lele41g0850 393 MobiDBLite consensus disorder prediction 10 32 - -
Lele41g0850 393 MobiDBLite consensus disorder prediction 91 109 - -
Lele41g0850 393 Gene3D - 159 221 - -
Lele41g0850 393 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 148 384 IPR044823 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele41g0850 Lele-ChrLele41 18199678 18200859 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele41g0850 313 380 Trihelix Transcription Factor Family AT3G14180 44.118 2.87e-11 62.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Lele41g0850 Myb_DNA-bind_4 1.6e-21 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele41g0850 41 18199678 18200859 Lele43g0542 43 4897410 4898648 hybridization
Lele41g0850 41 18199678 18200859 Lele44g0506 44 3886607 3891634 hybridization