Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele41g0835 ATGCTGCTAATGTTGCTGATGGATGTTACCTCTTCAGAACCAAATAGAAACTCCCAAACCGACAGATATCCATTGCTGATGGAGCAGTCTGAAAGCCACCATCAACACGTAATTGACATCACAAGGAATGGTGATGCTTTATCCAACTCATCTCATGTTGCTCAACTTCCTGAAATACATTCAATGCAGAATGAAGATCAACAGTCCAGTGGTACACTAGACCCTACTCATCAAACATCTTCCTCATCTAGATTGAACTCTAGAAATTCTTCATCGACTAGAGGTGAGGGGTATCGTCATCGAAGAAGGAATCCGTTAAATTCTGGATTATGGATTTCAGTTGAGCTTGTTGTCACTGTGGGTCAGATCATAGCATCTATAGTTGTCTTGTCATTGTCAAGGAGCGAAAATCCACAGGCCCCATTATTTGCATGGGTTGTGGGTTATACATCTGGTTGTGTTGCCACACTTCCTATTCTATATTGGCGGTATCGAAGCCGTAATCAAAGTAATGAACAAGATACATCTCAACAATCTCAAGGACCTTCTGGAAGTGATCATCCATTACCTACCTCATACACTGCTATCTCCAATGCTCATGTTTTAGATGATGAGAATAGTCATGTGACAGCATCAGCTGCTAGAAACTCTAGGATTCCTGGAGCTTTTCTTTCTAGGCTCAATGGATTAGTAGATCATTTCAAAATGGCCTTAGATTGCTTCTTTGCTGTTTGGTTTGTTGTGGGCAACGTGTGGATCTTTGGAGGGCACACTTCTCCTTCGGATGCTCCAAAATTGTATAGGTTATGTATTGTGTTTCTTACCTTTAGCTGCATTGGATATGCTATGCCATTTATCCTATGTGCAACAATTTGTTGCTGCCTACCTTGCATAATTTCTGTCCTCGGCATTCGGGAGGATTTTTCACAAATTAGAGGCGCAACAATAGAGTCTATCAATGCGCTGCCAATTTACAAGTTCAAATTGAAGAAAACTGAAAATAGCGATAGTCAGGATGTCAACACAGCTATAGATGAAGGTGGCATCTTCGCTGCAGGGACAGAAAAGGAGCGGGCCATATCTGGAGAAGATGCTGTTTGTTGCATTTGCTTGGCGAAATATGCAGACAATGATGATCTTAGGGAGTTACCCTGTCTTCATTTCTTTCACGTAGAGTGTGTCGACAAATGGTTGAAGATAAACGCATCATGTCCTCTTTGTAAAAGTGATGTTGGCATGGTTAGAGGAGACTCTCCTTCAGCTGGGGACTCCAGTTAG 1278 0.4194 MLLMLLMDVTSSEPNRNSQTDRYPLLMEQSESHHQHVIDITRNGDALSNSSHVAQLPEIHSMQNEDQQSSGTLDPTHQTSSSSRLNSRNSSSTRGEGYRHRRRNPLNSGLWISVELVVTVGQIIASIVVLSLSRSENPQAPLFAWVVGYTSGCVATLPILYWRYRSRNQSNEQDTSQQSQGPSGSDHPLPTSYTAISNAHVLDDENSHVTASAARNSRIPGAFLSRLNGLVDHFKMALDCFFAVWFVVGNVWIFGGHTSPSDAPKLYRLCIVFLTFSCIGYAMPFILCATICCCLPCIISVLGIREDFSQIRGATIESINALPIYKFKLKKTENSDSQDVNTAIDEGGIFAAGTEKERAISGEDAVCCICLAKYADNDDLRELPCLHFFHVECVDKWLKINASCPLCKSDVGMVRGDSPSAGDSS 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele41g0835 425 SMART ringv_2 366 408 IPR011016 GO:0008270
Lele41g0835 425 MobiDBLite consensus disorder prediction 62 93 - -
Lele41g0835 425 FunFam E3 ubiquitin-protein ligase 350 416 - -
Lele41g0835 425 Pfam Ring finger domain 367 408 IPR001841 -
Lele41g0835 425 ProSiteProfiles Zinc finger RING-type profile. 367 408 IPR001841 -
Lele41g0835 425 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 27 411 - -
Lele41g0835 425 MobiDBLite consensus disorder prediction 62 102 - -
Lele41g0835 425 SMART ring_2 367 407 IPR001841 -
Lele41g0835 425 CDD RING-H2_RNF111_like 366 410 - -
Lele41g0835 425 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 348 415 IPR013083 -
Lele41g0835 425 SUPERFAMILY RING/U-box 360 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele41g0835 Lele-ChrLele41 18066920 18070305 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele41g0835 7 412 C3H Transcription Factor Family AT1G80400 57.213 4.34e-167 473
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele41g0835 41 18066920 18070305 Lele43g0560 43 5036464 5039553 hybridization
Lele41g0835 41 18066920 18070305 Lele44g0521 44 4035482 4038424 hybridization