Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele41g0833 ATGGAAAAGGATGGAGGTTTGGAACTTGAGATAACGGAGCTGAGGTTGGGACTTCCTGGGAGGGAGAAGAAGAATGAGAAGAAGAGGCTGTTCTCGGAGATTGATGATGATCATGAGGAGGATAGTGGTGGTGGAGAGGATCAGAACAGCTCGTCGGAGGGAGATCAGCGGAAGGTGGTGGTGGGGTGGCCGCCGGTGTGCTCGTACAGGAGGAAGAATAGCATGATGAACAACAATGAAGGGTCAAAAATGTACGTGAAAGTGAGCATGGATGGAGCTCCGTTCTTACGCAAAATTGACTTGCAAAAGCTTAAGGCTTACTCTGATCTCGCTCTCGCCTTGGAAAATCTCTTTGGTTGCTATGGAATCAAGGAGGCGTTGAAGAAAGGAGACAAAAGCGAACACGTTCCCATTTATGAGGACAAAGACGGTGACTGGATGCTCGTTGGCGATGTCCCTTGGGAAATGTTTATGGAGTCATGCAAGAGGTTGAGGATAATGAAGAAAACAGACGCAAAAGGATTTGGTGCGACACCAAAAGGGTCTCTAATAATTAAAGGGATATAA 567 0.4709 MEKDGGLELEITELRLGLPGREKKNEKKRLFSEIDDDHEEDSGGGEDQNSSSEGDQRKVVVGWPPVCSYRRKNSMMNNNEGSKMYVKVSMDGAPFLRKIDLQKLKAYSDLALALENLFGCYGIKEALKKGDKSEHVPIYEDKDGDWMLVGDVPWEMFMESCKRLRIMKKTDAKGFGATPKGSLIIKGI 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele41g0833 188 Gene3D - 77 180 - -
Lele41g0833 188 FunFam Auxin-responsive protein 78 179 - -
Lele41g0833 188 MobiDBLite consensus disorder prediction 22 57 - -
Lele41g0833 188 ProSiteProfiles PB1 domain profile. 83 169 IPR000270 GO:0005515
Lele41g0833 188 MobiDBLite consensus disorder prediction 22 36 - -
Lele41g0833 188 Pfam AUX/IAA family 42 175 IPR033389 -
Lele41g0833 188 SUPERFAMILY CAD & PB1 domains 73 168 - -
Lele41g0833 188 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 7 172 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele41g0833 Lele-ChrLele41 18044366 18047882 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele41g0833 72 173 B3 DNA Binding Superfamily AT4G23980 36.275 8.32e-11 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lele41g0833 AUX_IAA 4.8e-45 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele37g0420 37 3476957 3478483 Lele41g0833 41 18044366 18047882 CCT
Lele41g0833 41 18044366 18047882 Lele43g0562 43 5054285 5058128 hybridization
Lele41g0833 41 18044366 18047882 Lele44g0522 44 4052958 4057328 hybridization