Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele41g0777 ATGAATGAACCAAAAGAATCTCTTTGCTCACACCTCTCAATGACCTATAGGTGTGGATTTGAAGTACGGATACTCCCTAAAATTCGAATGACGCAAGAAGCATTCAGCAATACAAGAGATGGTGTTTGGAATTTACAAAATGAACAGACCAAAGAAAGGACGGCAGTTGCCTTTTTAAGAGTTGATGATGAACACATGAAAGTGTTTGAGAATCGGGTTAGGCAGATTCTCATGTCTTCAGGATCTACTACTTTTACAAAAATTGTCAATAAATGGAACACCGCTTTGATAGGTCTTATGACATACTTCCGGGAGGCAACTGTACACACTCAAGAGCTGTTAGATTTGCTAGTTAAATGTGAAAATAAGATTCAGACTCGAATTAAGATTGGATTAAACTCAAAGATGCCTAGCAGATTTCCTCCTGTCATTTTCTACACCCCAAAAGAAATCGGAGGACTTGGTATGTTGTCCATGGGTCACATTTTGATTCCACAAAGTGATCTCCGGTACAGTCAGCAGACTGATGTTGGCGTGACGCACTTCAGGAGTGGGATGAGTCATGAAGAGGACCAGTTGATTCCCAACCTTTATCGCTACATTCAGCCTTGGGAGAGTGAATTCATTGACTCACAGCGCGTCTGGGCTGAATATGCATTAAAGAGGCAGGAGGCACAAGCACAAAATAGGCGTTTGACTCTTGAAGATCTGGAAGATTCATGGGATAGAGGTATACCACGTATAAACACTTTATTCCAAAAGGATAGACACACCTTGGCTTATGATAAAGGATGGAGGGTGCGTACAGACTTCAAGCAGTACCAGGTTCTGAAACAAAACCCTTTCTGGTGGACACACCAGAGGCATGATGGGAAGTTGTGGAACTTGAACAATTACCGTACTGATGTTATTCAAGCCCTTGGAGGTGTTGAAGGAATTCTTGAACATACTTTATTCAAAGGAACATACTTTCCAACCTGGGAAGGTCTGTTTTGGGAAAAGGCATCAGGCTTTGAGGAATCTATGAAGTACAAGAAGTTAACAAATGCTCAGAGATCTGGTCTCAACCAGATACCTAACCGTAGGTTTACTCTTTGGTGGTCACCAACCATAAATCGAGCCAATGTTTATGTGGGGTTCCAGGTGCAGTTAGATCTGACCGGTATTTTCATGCATGGGAAGATACCTACTTTGAAGATATCACTCATTCAGATATTCCGAGCCCATTTGTGGCAGAAGATCCATGAGAGCGTTGTCATGGATCTGTGTCAGGTTTTGGATCAGGAATTGGATGCTTTGGAGATTGAGACTGTCCAGAAGGAAACAATCCATCCAAGGAAAAGTTACAAAATGAACAGCTCTTGTGCAGACGTTCTTCTGTTTGCGGCCCATCGATGGCCAATGTCAAAGCCTAGTCTGGTAGCTGAATCTAAGGATGTTTTTGATCAGAAGGCAAGCAATAAATACTGGATTGATGTACAGCTTAGATGGGGGGATTATGACTCTCATGATATTGAGCGTTACACACGGGCCAAATTTATGGATTATACAACCGATAATATGTCTATATATCCATCTCCTACAGGGGTGATGATTGGCATTGATTTGGCGTATAACTTGCACTCTGCATTTGGCAACTGGTTCCCTGGTTCAAAGCCACTGCTTCAGCAGGCCATGAATAAGATCATGAAGTCAAATCCTGCATTATATGTCTTGAGAGAGCGGATAAGGAAGGGGCTTCAGTTGTATTCTTCAGAGCCTACGGAACCATACTTGTCATCCCAAAACTATGGAGAGATATTCAGCAATCAGATTATATGGTTTGTTGATGACACTAATGTGTATCGTGTTACAATTCATAAGACCTTTGAAGGAAATCTTACAACAAAACCCATCAATGGTGCCATCTTCATTTTTAATCCGAGGACTGGCCAATTGTTTTTGAAGGTTATTCATACAAGTGTCTGGGCTGGTCAGAAGCGTCTTGGCCAGCTGGCCAAGTGGAAAACAGCAGAAGAAGTTGCTGCTCTTGTACGTTCTTTGCCTGTTGAAGAACAGCCCAAGCAAATTATTGTCACTCGCAAAGGAATGTTGGATCCTTTAGAGGTTCACCTTCTCGACTTCCCCAACATCGTTATTAAAGGAAGTGAACTGCAACTCCCATTCCAAGCATGCTTGAAGATTGAGAAATTTGGGGATCTTATTTTGAAGGCTACAGAACCTCAAATGGTTTTATTCAACATTTATGATGACTGGCTGAAAAGTATTTCATCTTACACCGCATTCTCCAGGTTGATTTTGATTCTCCGTGCTCTTCACGTAAATAATGAGAAGGCGAAGATGCTGTTAAAGCCTGACAAAACAATTATTACTGAACCACATCACATCTGGCCTTCTCTCAGTGATGACCAGTGGATGAAGGTGGAGGTTGCATTAAGAGATCTCATACTCTCAGATTATGCCAAGAAGAACAATGTCAACACATCTGCCTTGACTCAGTCTGAGATTCGTGACATTATACTTGGAGCTGAGATTACTCCTCCTTCTCAACAGCGGCAACAGATAGCAGAGATTGAGAAACAGGCCAAAGAAGCCAGTCAACTGACGGCTGTAACAACAAGGACAACTAATGTTCATGGTGATGAGCTTATTGTCACCACCACTAGTCCCTATGAGCAGGCTGCATTTGGTTCGAAGACCGACTGGCGTGTCAGAGCAATTTCAGCAACAAATCTCTACCTTCGTGTTAATCATATTTACGTAAACTCTGAAGATATAAAGGAAACTGGTTACACCTACATCATGCCCAAGAACATTTTGAAGAAATTTATCTGCATAGCTGATCTTCGAACACAAATTGCTGGCTACCTGTATGGTATAAGTCCTCCAGACAACCCACAGGTTAAAGAGATCCGCTGCATTGTGATGCCACCACAATGGGGGACTCATCAGCAAGTCCATCTCCCATTAGCTCTTCCGGAGCATGATTTCTTGAATGACTTGGAGCCTTTGGGATGGATGCATACTCAACCAAATGAACTTCCACAGTTGTCTCCTCAGGATCTCACTTCACATGCTAAGGTCCTAGAGAACAACAAGCAATGGGACGGCGAGAAGTGCATTATCTTGACTTGCAGTTTTACTCCAGGGTCCTGTTCATTAACTGCATACAAGCTCACTCCATCTGGGTATGAGTGGGGACGTGTCAATAAGGATACTGGAAGCAATCCTCATGGTTACCTTCCTACTCACTATGAGAAGGTTCAGATGCTCCTCAGCGATCGCTTCTATGGTTTCTACATGGTTCCCGATAATGGGCCGTGGAATTACAACTTCATGGGGGTGAGACACGCATCCGGGATGAAGTATGGAGTGAAGTTGGGGACACCTCGTGAGTATTACCATGAAGATCACCGACCAACTCATTTCTTAGAGTTCAGCAACATGGAGGAAGGGGAAACAACCGCCGAGGGAGATCGCGAGGATACATTTACTTGA 3498 0.4302 MNEPKESLCSHLSMTYRCGFEVRILPKIRMTQEAFSNTRDGVWNLQNEQTKERTAVAFLRVDDEHMKVFENRVRQILMSSGSTTFTKIVNKWNTALIGLMTYFREATVHTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVIFYTPKEIGGLGMLSMGHILIPQSDLRYSQQTDVGVTHFRSGMSHEEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEAQAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDVIQALGGVEGILEHTLFKGTYFPTWEGLFWEKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKIHESVVMDLCQVLDQELDALEIETVQKETIHPRKSYKMNSSCADVLLFAAHRWPMSKPSLVAESKDVFDQKASNKYWIDVQLRWGDYDSHDIERYTRAKFMDYTTDNMSIYPSPTGVMIGIDLAYNLHSAFGNWFPGSKPLLQQAMNKIMKSNPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGEIFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKVIHTSVWAGQKRLGQLAKWKTAEEVAALVRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKIEKFGDLILKATEPQMVLFNIYDDWLKSISSYTAFSRLILILRALHVNNEKAKMLLKPDKTIITEPHHIWPSLSDDQWMKVEVALRDLILSDYAKKNNVNTSALTQSEIRDIILGAEITPPSQQRQQIAEIEKQAKEASQLTAVTTRTTNVHGDELIVTTTSPYEQAAFGSKTDWRVRAISATNLYLRVNHIYVNSEDIKETGYTYIMPKNILKKFICIADLRTQIAGYLYGISPPDNPQVKEIRCIVMPPQWGTHQQVHLPLALPEHDFLNDLEPLGWMHTQPNELPQLSPQDLTSHAKVLENNKQWDGEKCIILTCSFTPGSCSLTAYKLTPSGYEWGRVNKDTGSNPHGYLPTHYEKVQMLLSDRFYGFYMVPDNGPWNYNFMGVRHASGMKYGVKLGTPREYYHEDHRPTHFLEFSNMEEGETTAEGDREDTFT 1165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele41g0777 1165 Pfam PRP8 domain IV core 589 818 IPR021983 -
Lele41g0777 1165 SUPERFAMILY Ribonuclease H-like 592 844 IPR012337 -
Lele41g0777 1165 SUPERFAMILY Ribonuclease H-like 17 82 IPR012337 -
Lele41g0777 1165 FunFam Pre-mRNA-processing-splicing factor 8 751 849 - -
Lele41g0777 1165 Gene3D - 590 750 IPR043172 -
Lele41g0777 1165 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 930 1028 IPR000555 GO:0005515|GO:0008233|GO:0008237
Lele41g0777 1165 CDD RNase_H_like_Prp8_IV 595 845 IPR021983 -
Lele41g0777 1165 FunFam Pre-mRNA-processing-splicing factor 8 12 132 - -
Lele41g0777 1165 Gene3D Cytidine Deaminase, domain 2 887 1165 - -
Lele41g0777 1165 PANTHER PRE-MRNA SPLICING FACTOR PRP8 17 1154 IPR027652 GO:0000398|GO:0005681
Lele41g0777 1165 Gene3D - 13 132 IPR042516 -
Lele41g0777 1165 Pfam U6-snRNA interacting domain of PrP8 271 429 IPR019580 GO:0017070
Lele41g0777 1165 ProSiteProfiles MPN domain profile. 932 1063 IPR037518 -
Lele41g0777 1165 Gene3D - 751 849 IPR043173 -
Lele41g0777 1165 CDD MPN_PRP8 896 1146 - -
Lele41g0777 1165 Gene3D - 410 581 - -
Lele41g0777 1165 Pfam U5-snRNA binding site 2 of PrP8 39 172 IPR019581 GO:0030623
Lele41g0777 1165 FunFam Pre-mRNA-processing-splicing factor 8 598 750 - -
Lele41g0777 1165 FunFam Pre-mRNA-processing-splicing factor 8 887 1165 - -
Lele41g0777 1165 Pfam PROCT (NUC072) domain 1041 1162 IPR012984 -
Lele41g0777 1165 FunFam Pre-mRNA-processing-splicing factor 8 410 581 - -
Lele41g0777 1165 SMART pad1_6 928 1062 IPR000555 GO:0005515|GO:0008233|GO:0008237
Lele41g0777 1165 Coils Coil 220 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele41g0777 Lele-ChrLele41 17626307 17636871 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele41g0777 41 17626307 17636871 Lele38g0479 38 3857618 3859711 CCT
Lele41g0777 41 17626307 17636871 Lele39g0917 39 18124479 18128989 CCT
Lele41g0777 41 17626307 17636871 Lele40g0452 40 3723035 3725128 CCT
Lele41g0777 41 17626307 17636871 Lele43g0621 43 5485961 5498154 hybridization
Lele41g0777 41 17626307 17636871 Lele44g0573 44 4447833 4459322 hybridization