Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele41g0774 ATGGCCGCTGTTTCTTTCTCTTTTCAACCTCATCTGGGTCCCTCCTCTGCTGCTCCTCCTCCTCCTTCTTCTTCGTCGTCGTCCTCCTTTTTGTGTGGTGGTGTCCATCTTCGGACTCATGAGAACTTCATCTCTATCCATTCACCTTCCCATTTTTCTTCTTCTACTTTAAATAATAAGTCCTCCTCGAGGAGCTTCCGAACGGCGATTGCTGCTTCTGGCGACTATTATGCGACTCTTGGAGTCTCCAAATCCGCGACTAACAAGGAGATTAAGGCGGCTTATAGAAAGTTAGCTCGTCAGTACCATCCTGATGTGAACAAGGAACCTGGAGCTATTGACAAGTTCAAGGAAATTAGTTCTGCATATGAGGTGCTATCAGATGATAAGAAGAGGGCTTTGTATGATCAATATGGAGAGGCTGGAGTTAAGAGTGCAGTAGGAGGAGCATCAAATGCTTATACGACTAATCCATTTGATTTGTTTGATACATTTTTTGGGCCAAGTATGGGTGGCTTTGGTGGTATGGATCCAACTGGATTTGGAACACGCCGCCGTAGTACTGTTACTAAGGGTGGAGACATTCGTTATGATATTTTGTTGGAATTTTCTGAGGCAATTTTTGGCGCTGACAAGGAATTTGAGCTTTCCCATTTGGAAAAATGTGAAGCTTGTAATGGTACTGGAGCAAAGATTGGCTCCAAGATGAGAATATGTTCAACTTGTGGAGGTAGGGGTCAGGTGATGAGGACTGAACAAACACCTTTTGGTTTGTTCTCACAGGTTTCTGTATGTCCAAACTGTGGAGGGGATGGTGAAATCATATCTGAATTTTGTCGTAAATGTAATAGTGAAGGACGTATTCGTGTTAAGAGAAATATTAAAGTAAAAGTTCCTCCAGGGGTTAGCTCAGGCAGTGTTCTGAGAGTTGCTGGTGAGGGTGATGCTGGGCCTCGAGGGGTTTCTCCTGGAGATCTATTTGTGTATCTTGAAGTGGAAGAGATTCCAGGAATTCAAAGAGATGGCATTAATCTCTCCTCAACGATAACAATCGGTTATCTGGATGCCATACTAGGGGTGGTTGTCAAGGTAAATACAGTTGAAGGCATTTCTGAACTAAAAATTCCCCCTGGTACCCAACCTGGAGATGTCCTTGTCCTTGAAAGGAAAGGTGCACCAAAATTAAACAAACCATCCATACGTGGTGACCACTTATTCACAGTTCAAGTTACAATACCAAAACGTATCAGTTTAAAGGAGCGCGAGTTGCTTGAAGAACTTGCTTCACGAGGCACCAAGACGAGTAGCCCTTCAAAACCCCGTCCTAGCATCCACTCTTCCAAGGGTAGGGCTGAAGATCCTGCACCTCAAAGTGCTGAAAGTCCCACAATGGTTGAAGAAAAAACTGAACAGTCAGAAGACCAAGATGACATATGGAAGAAATTAAAGAATTTTGCTGGGTCCGTGGCAAATGGAGCTCTGAAGTGGCTAAAAGATAACCTGTAG 1506 0.4389 MAAVSFSFQPHLGPSSAAPPPPSSSSSSSFLCGGVHLRTHENFISIHSPSHFSSSTLNNKSSSRSFRTAIAASGDYYATLGVSKSATNKEIKAAYRKLARQYHPDVNKEPGAIDKFKEISSAYEVLSDDKKRALYDQYGEAGVKSAVGGASNAYTTNPFDLFDTFFGPSMGGFGGMDPTGFGTRRRSTVTKGGDIRYDILLEFSEAIFGADKEFELSHLEKCEACNGTGAKIGSKMRICSTCGGRGQVMRTEQTPFGLFSQVSVCPNCGGDGEIISEFCRKCNSEGRIRVKRNIKVKVPPGVSSGSVLRVAGEGDAGPRGVSPGDLFVYLEVEEIPGIQRDGINLSSTITIGYLDAILGVVVKVNTVEGISELKIPPGTQPGDVLVLERKGAPKLNKPSIRGDHLFTVQVTIPKRISLKERELLEELASRGTKTSSPSKPRPSIHSSKGRAEDPAPQSAESPTMVEEKTEQSEDQDDIWKKLKNFAGSVANGALKWLKDNL 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele41g0774 501 FunFam Chaperone protein dnaJ 1, mitochondrial 333 440 - -
Lele41g0774 501 Gene3D DnaJ domain 72 176 IPR036869 -
Lele41g0774 501 Gene3D - 192 328 - -
Lele41g0774 501 MobiDBLite consensus disorder prediction 1 25 - -
Lele41g0774 501 Gene3D - 222 286 - -
Lele41g0774 501 MobiDBLite consensus disorder prediction 427 477 - -
Lele41g0774 501 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 40 432 - -
Lele41g0774 501 Pfam DnaJ central domain 222 286 IPR001305 GO:0031072|GO:0051082
Lele41g0774 501 SUPERFAMILY HSP40/DnaJ peptide-binding domain 339 424 IPR008971 GO:0006457|GO:0051082
Lele41g0774 501 PRINTS DnaJ domain signature 111 131 IPR001623 -
Lele41g0774 501 PRINTS DnaJ domain signature 131 150 IPR001623 -
Lele41g0774 501 PRINTS DnaJ domain signature 77 95 IPR001623 -
Lele41g0774 501 PRINTS DnaJ domain signature 95 110 IPR001623 -
Lele41g0774 501 CDD DnaJ_zf 222 286 IPR001305 GO:0031072|GO:0051082
Lele41g0774 501 CDD DnaJ_C 194 416 - -
Lele41g0774 501 Pfam DnaJ C terminal domain 195 413 IPR002939 -
Lele41g0774 501 TIGRFAM DnaJ_bact: chaperone protein DnaJ 75 429 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Lele41g0774 501 SUPERFAMILY HSP40/DnaJ peptide-binding domain 190 342 IPR008971 GO:0006457|GO:0051082
Lele41g0774 501 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 209 289 IPR036410 -
Lele41g0774 501 ProSiteProfiles Zinc finger CR-type profile. 209 291 IPR001305 GO:0031072|GO:0051082
Lele41g0774 501 Gene3D - 338 430 - -
Lele41g0774 501 CDD DnaJ 75 128 IPR001623 -
Lele41g0774 501 FunFam Chaperone protein dnaJ A6 chloroplastic 222 286 - -
Lele41g0774 501 SUPERFAMILY Chaperone J-domain 73 181 IPR036869 -
Lele41g0774 501 Pfam DnaJ domain 75 136 IPR001623 -
Lele41g0774 501 ProSiteProfiles dnaJ domain profile. 75 139 IPR001623 -
Lele41g0774 501 ProSitePatterns Nt-dnaJ domain signature. 116 135 IPR018253 -
Lele41g0774 501 MobiDBLite consensus disorder prediction 429 443 - -
Lele41g0774 501 Hamap Chaperone protein DnaJ [dnaJ]. 72 485 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Lele41g0774 501 FunFam Chaperone protein dnaJ A6 chloroplastic 72 178 - -
Lele41g0774 501 SMART dnaj_3 74 131 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele41g0774 Lele-ChrLele41 17603219 17609388 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele41g0774 61 182 C2H2 Transcription Factor Family AT1G74250 36.567 4.49e-10 60.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele41g0774 41 17603219 17609388 Lele43g0623 43 5508187 5515420 hybridization
Lele41g0774 41 17603219 17609388 Lele44g0575 44 4472084 4478148 hybridization