Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele41g0763 ATGGTTTGCGGGGCATTTCAGGTCAAGCTGAACTGCAATTTTGTAGTTGATATGGAAGTAGATGATGATTACGTGGAGTATGTGCCCGTGGCCAAGCGGAGGGCCATGGATGCTCAGAAGGTTCTTGAACGAAAAGGGAAATCATCTTCCTCCACAGTTGATGATGATTGGGAGAAGTCAAGAGTGGCTGAGGCTAAACCAAGTCTTCTTGTTAAGGCTTCCCAGTTGAAACGGGATCAACCTGAAATTAGTCCTACAGAGCAGATTGTTCGACAGGAAAAGGAGATGATTGAGAACTTATCAGATCGAAAAACCCTAATGTCTGTTCGAGAATTGGCCAAGGGGATCACTTATACAGAGCCTTTGCCTACAGGATGGAAGCCACCTTTACCCATCAGAAGAATGTCTAAAAAGAAACGTGATTTGATTCGGAAGCAGTGGCATATAATCGTCAACGGTGAAGATATCCCACCTCCAATTAAGAATTTCAAGGATATGAGGTTTCCTGAGTCAATTTTGAACAAGCTGAAAGCCAAAAGGATTGTGCAGCCAACACCTATTCAAGTGCAAGGTCTTCCTGTGATCTTATCTGGGAGGGATATGATTGGGATTGCATTCACAGGATCAGGGAAAACTCTTGTCTTTGTATTGCCAATGATCATGCTTGCTTTGCAGGAGGAAATTATGATGCCTATTGTTCCAGGAGAAGGTCCATTCGGTTTGATTGTTTGTCCTTCGAGGGAACTCGCTAGACAAACTTATGAGGTGGTCGAACAGTTTCTGATACCTTTGAGAGAAGCTGGATATCATGAACTTAGGCCTTTGCTTTGTATTGGTGGAGTGGATATGAGATCTCAGCTAGATGTCGTGAAGAAGGGTGTTCATATTGTTGTTGCCACTCCCGGCAGGTTGAAGGATATGTTGGCGAAGAAAAAAATGAATCTTGATAATTGCAGGTATTTAACTTTAGATGAGGCTGATAGATTGGTAGATTTGGGATTCGAAGATGACATAAGAGAAGTGTTTGATCACTTGAAAGCTCAAAGGCAGACTCTCTTATTTTCTGCCACTATGCCGACCAAGATTCAGAATTTTGCTAGAAGTGCCCTGGTGAAACCTGTTATTGTCAACGTGGGGCGAGCGGGGGCGGCGAATCTTGATGTAATCCAGGAAGTGGAGTATGTTAAGCAAGAGGCGAAAATAGTTTATCTGCTTGAGTGCCTGCAAAAAACCCCACCTCCAGTTTTAATATTCTGTGAGAACAAGGCAGATGTGGATGACATTCATGAATATCTTCTCCTGAAAGGAGTTGGAGCAGTGGCTGTTCATGGAGGCAAAGATCAGGAAGAAAGAGAGTATTCCATTGCAGCCTTTAAGTCTGGGAAGAAAGATGTGTTGGTTGCAACCGATGTCGCATCCAAGGGGTTGGACTTCCCCGATATTCAGCATGTTATTAACTATGACATGCCTAATGAGATCGAAAATTATGTTCATAGGATTGGTCGAACTGGAAGATGTGGCAAGACAGGCATAGCAACAACATTCATAAACAAGAATCAAACTGAGACAACCTTGCTTGATTTGAAACATCTGTTGCAAGAAGCGAAACAGCGCATTCCCCCTGTTTTAGCAGATTTGAATGATCCAATGGATGATAATGATGAAATCACTGGTAAAAGTGGGGTCAAGGGTTGTGCCTATTGTGGTGGGCTTGGTCACCGCATTCGTGACTGCCCCAAGCTGGAACATCAGAAAAGCATGGCCATTGCAAATAGTAGAAGAGACTATTTTGGTTCAGGTGGATATAGGGGAGAGATTTGA 1821 0.4333 MVCGAFQVKLNCNFVVDMEVDDDYVEYVPVAKRRAMDAQKVLERKGKSSSSTVDDDWEKSRVAEAKPSLLVKASQLKRDQPEISPTEQIVRQEKEMIENLSDRKTLMSVRELAKGITYTEPLPTGWKPPLPIRRMSKKKRDLIRKQWHIIVNGEDIPPPIKNFKDMRFPESILNKLKAKRIVQPTPIQVQGLPVILSGRDMIGIAFTGSGKTLVFVLPMIMLALQEEIMMPIVPGEGPFGLIVCPSRELARQTYEVVEQFLIPLREAGYHELRPLLCIGGVDMRSQLDVVKKGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHLKAQRQTLLFSATMPTKIQNFARSALVKPVIVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVGAVAVHGGKDQEEREYSIAAFKSGKKDVLVATDVASKGLDFPDIQHVINYDMPNEIENYVHRIGRTGRCGKTGIATTFINKNQTETTLLDLKHLLQEAKQRIPPVLADLNDPMDDNDEITGKSGVKGCAYCGGLGHRIRDCPKLEHQKSMAIANSRRDYFGSGGYRGEI 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele41g0763 606 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 161 189 IPR014014 GO:0003724
Lele41g0763 606 MobiDBLite consensus disorder prediction 40 59 - -
Lele41g0763 606 SUPERFAMILY Retrovirus zinc finger-like domains 564 585 IPR036875 GO:0003676|GO:0008270
Lele41g0763 606 SMART c2hcfinal6 564 580 IPR001878 GO:0003676|GO:0008270
Lele41g0763 606 Pfam Helicase conserved C-terminal domain 400 507 IPR001650 -
Lele41g0763 606 Pfam DEAD/DEAH box helicase 185 364 IPR011545 GO:0003676|GO:0005524
Lele41g0763 606 Pfam Zinc knuckle 564 580 IPR001878 GO:0003676|GO:0008270
Lele41g0763 606 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 192 376 IPR014001 -
Lele41g0763 606 CDD DEADc_DDX41 172 377 IPR044113 GO:0000398|GO:0003724|GO:0005524
Lele41g0763 606 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 237 522 IPR027417 -
Lele41g0763 606 SMART helicmild6 426 507 IPR001650 -
Lele41g0763 606 ProSiteProfiles Zinc finger CCHC-type profile. 565 580 IPR001878 GO:0003676|GO:0008270
Lele41g0763 606 SMART ultradead3 180 391 IPR014001 -
Lele41g0763 606 FunFam Probable ATP-dependent RNA helicase DDX41 128 377 - -
Lele41g0763 606 Coils Coil 518 538 - -
Lele41g0763 606 FunFam Probable ATP-dependent RNA helicase DDX41 386 548 - -
Lele41g0763 606 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 387 547 IPR001650 -
Lele41g0763 606 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 121 547 - -
Lele41g0763 606 CDD SF2_C_DEAD 388 516 - -
Lele41g0763 606 Gene3D - 130 380 IPR027417 -
Lele41g0763 606 Gene3D - 386 548 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele41g0763 Lele-ChrLele41 17532437 17535674 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele41g0763 159 546 Eukaryotic Initiation Factors Gene Family AT3G19760 32.398 1.18e-55 192