Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele41g0730 ATGAATGACTTATCTGTCCCGGGGGGAGGAAGTAGAGCTCAGTTTTCGATAAGAAAATGTCAGGGAGAGGCTGTTGTTACTGCCGAGACGGCTGCACCAATTGTTGGTGAGCCAATGGACATCATGACTGCCTTGCAGCTTGTGCTGAGAAAATCACTGGCTTATGGTGGTCTTGCTTGTGGACTTCACGAAGGCGCAAAGGTCATTGAAAAGCACTCTGCACAGCTCTGCGTTCTTGCCGAGGATTGTGACCAACCTGACTATGTAAAACTCGTCAAAGCCCTCTGCGCTGATCACAGCGTTAGCTTGCTGACAGTTCCTAGCGCAAAAACCCTCGGAGAGTGGGCCGGTTTGTGTAAGATCGACTCAGAAGGGAAGGCGAGAAAGGTGGTTGGTTGCTCGTGTGTGGTTGTCAAGGATTTTGGAGAGGAACATGAAGCCTATAACGTTGTTTTGCAGCATGTTAAATCTCACTGA 477 0.4927 MNDLSVPGGGSRAQFSIRKCQGEAVVTAETAAPIVGEPMDIMTALQLVLRKSLAYGGLACGLHEGAKVIEKHSAQLCVLAEDCDQPDYVKLVKALCADHSVSLLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEEHEAYNVVLQHVKSH 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele41g0730 158 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 44 137 IPR004038 -
Lele41g0730 158 FunFam 40S ribosomal protein S12 25 158 - -
Lele41g0730 158 PRINTS Ribosomal protein S12E family signature 128 141 IPR000530 GO:0003735|GO:0005840|GO:0006412
Lele41g0730 158 PRINTS Ribosomal protein S12E family signature 48 61 IPR000530 GO:0003735|GO:0005840|GO:0006412
Lele41g0730 158 PRINTS Ribosomal protein S12E family signature 62 78 IPR000530 GO:0003735|GO:0005840|GO:0006412
Lele41g0730 158 PRINTS Ribosomal protein S12E family signature 103 124 IPR000530 GO:0003735|GO:0005840|GO:0006412
Lele41g0730 158 PANTHER 40S RIBOSOMAL PROTEIN S12 33 158 IPR000530 GO:0003735|GO:0005840|GO:0006412
Lele41g0730 158 Gene3D - 24 158 IPR029064 -
Lele41g0730 158 ProSitePatterns Ribosomal protein S12e signature. 44 62 IPR000530 GO:0003735|GO:0005840|GO:0006412
Lele41g0730 158 SUPERFAMILY L30e-like 38 156 IPR029064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele41g0730 Lele-ChrLele41 17250285 17253609 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele41g0730 35 158 Cytoplasmic Ribosomal Protein Gene Family AT2G32060 75.000 2.49e-66 197