Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele41g0691 ATGGATGGTATTCATGGGAGTGATTCTCGGATGCGCATGGGTGCTGCACAACATCCAATGCATGTAACCTATGTGCCAGAAAATGAACAACATGGATTGGACCATATGAATGATGGGAATCAGATGGAAGACAATAACAATTGTGGTGATGCTAATGTCAGCAGACATGAGAGTGTAGAAGGAGAAGTTTCCAACCCTGGAAATGTTACTGACGATCATGGTGCATTAATTGAACAAGCTAGTGGTGACCAGCTCACGTTGTCTTTTCAAGGCCAGGTTTATGTATTTGACTCTGTGTCGCCGGAAAAGGTTCAAGCTGTGCTATTGTTATTGGGAGGCCGTGAAGTACCTTCCATGTCTGCAAATCCAATGAATGTTCACCATAATAATCGGGATATGTCTGGGACTCCTGTAAAACTCAGTGTCCCTCAAAGATTAGCCTCATTGATTAGATTTCGAGAAAAACGGAAAGAACGGAATTTTGAAAAGAAAATACGTTACACTGTTCGTAAAGAAGTGGCATTAAGGATGCAGAGAAATAAAGGTCAATTTACATCTTCCAAATCGAACCCTGATGAATCTGCTCCAGCTGCAACAAATTTGGGCACAAATGAAAACTGGACACCAGACAATATTGGATCCCAACAGCGGGATGTTGTCTGTAGGCACTGTGGCATCAGCGATAAATGCACACCAATGATGCGACGTGGACCTGAAGGGCCAAGAACCCTCTGCAATGCATGTGGACTTATGTGGGCAAATAAGGGAACTCTAAGGGACCTGACAAAAACTCCCTTACCTGAACACAATTCTTCATTAAATAGGATTGAGTTTAGCGAAAATGCTGACATGGACATCTTGTATTTTTACCCTTCATATATTAGCAGAGTTCCTTTATTCTTGCTCTGTGACAGACAGCTAAGTGGAGATTTTGATTAA 939 0.4207 MDGIHGSDSRMRMGAAQHPMHVTYVPENEQHGLDHMNDGNQMEDNNNCGDANVSRHESVEGEVSNPGNVTDDHGALIEQASGDQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREVPSMSANPMNVHHNNRDMSGTPVKLSVPQRLASLIRFREKRKERNFEKKIRYTVRKEVALRMQRNKGQFTSSKSNPDESAPAATNLGTNENWTPDNIGSQQRDVVCRHCGISDKCTPMMRRGPEGPRTLCNACGLMWANKGTLRDLTKTPLPEHNSSLNRIEFSENADMDILYFYPSYISRVPLFLLCDRQLSGDFD 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele41g0691 312 PANTHER GATA TRANSCRIPTION FACTOR 28 27 269 IPR045280 GO:0006355
Lele41g0691 312 ProSiteProfiles CCT domain profile. 145 187 IPR010402 GO:0005515
Lele41g0691 312 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 217 265 - -
Lele41g0691 312 MobiDBLite consensus disorder prediction 180 211 - -
Lele41g0691 312 Gene3D - 212 272 IPR013088 GO:0006355|GO:0008270
Lele41g0691 312 SMART GATA_3 215 273 IPR000679 GO:0006355|GO:0043565
Lele41g0691 312 ProSitePatterns GATA-type zinc finger domain. 221 248 IPR000679 GO:0006355|GO:0043565
Lele41g0691 312 ProSiteProfiles Tify domain profile. 78 113 IPR010399 -
Lele41g0691 312 Pfam CCT motif 145 187 IPR010402 GO:0005515
Lele41g0691 312 CDD ZnF_GATA 220 263 IPR000679 GO:0006355|GO:0043565
Lele41g0691 312 Pfam tify domain 81 112 IPR010399 -
Lele41g0691 312 Pfam GATA zinc finger 221 257 IPR000679 GO:0006355|GO:0043565
Lele41g0691 312 ProSiteProfiles GATA-type zinc finger domain profile. 215 263 IPR000679 GO:0006355|GO:0043565
Lele41g0691 312 SMART tify_2 78 113 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele41g0691 Lele-ChrLele41 16844857 16848845 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele41g0691 1 277 Tify Gene Family AT1G51600 59.298 6.48e-112 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lele41g0691 CCT 1.5e-14 CL0281