Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele41g0665 ATGAGCTTCTTGCAGGGGATTATCGACTCGCTCAGCTCTATCTTGTCTTCTCCCAATTCTTCTTCTAATGATTCTTCTCCTTCGAATTCCAACCTTCCCATCTCTTCGAATATGGAAGGCGTGCCTGCCGCGCCCTCAATTTCCAATGAACGAATCGCTTACAAGCTCAAAGGCTACTTCGATTTGGCCAAGGAAGAGATTGACAAGGCTGTTAGGGCCGAAGAGTGGGGCTTGGTCGATGATGCTGTTCTTCATTATAACAACGCCCAGCGGATTTTGATCGAAGCCAGTTCTAATGCTGTCCCTTCCTATATTAATTCCAGGTTTTCAAGTATTCCGTCACTGATCAAATCAATTAGTGTTGTTCATGTATTTATTATGCTGGATGGTTTCAAATATGTCCTAAGTAGACGAGCAGGCAGCAAGTCCACTATTCAGAAAACTGCTACTCAGGGACAAACCGCAGCAGTTTCACTTAAGCCATCAAATGCTAGAAAAGGTGTGTTGCAAAAGAATCATCAAAGAACAAACCATGTGGATAAAGATGCAAGCCCAAAATCTAGTCAGATATCTGGTGGAAATTTCGATGCAAAATTAGTTGAAACAATTAACACTGCCATAGTAGATAGAGGTCCTTCTGTTAGATGGGAAGATATTGCGGGTCTTGAGAAGGCAAAGCAAGCATTAATGGAAATGGTTATTTTGCCAACTAAAAGAAGAGACCTCTTCACTGGTCTTCGAAGGCCGGCTAGAGGTTTGCTTCTCTTTGGTCCCCCGGGTAATGGAAAAACCATGCTTGCCAAAGCAGTAGCTTCAGAATCAGCAGGAACATTTTTTAATGTATCCGCAGCTTCCTTGACATCAAAATGGGTTGGTGAAGGTGAAAAGCTTGTCCGGACTCTTTTCATGGTAGCTATATCCAGGCAACCATCAGTAATTTTCATTGATGAGATTGACAGTATTATGTCAACAAGGTTGGCTAATGAGAATGATGCAAGCAGACGATTAAAATCTGAATTTCTTATCCAGTTTGATGGGGTGACCTCCAATCCTGATGACATTGTAATTGTTATTGGAGCTACAAATAAGCCACAAGAATTGGATGATGCAGTTCTTCGGAGACTGGTGAAGAGAATTTACGTACCTTTGCCAGAGGCAAATGTTCGGAGACTTCTACTAAAGCACAAACTAAAGGGTCAAGCGTTCTCATTACCTAGTGGAGATCTAGAAAGGCTTGTAAAAGATACAGAAGGATATTCCGGAAGTGATCTACAAGCCTTGTGTGAAGAAGCGGCAATGATGCCAATAAGAGAGCTGGGTTCTGACATCCTAACTGTTAAGCCAAATCAGGTAAGAGGACTGAGATATGAGGATTTTAGGAAGGCAATGAGTGTAATTAGACCCAGTTTAAACAAAAGCAAGTGGGAAGAGCTTGAGCGATGGAATGAGGAATTTGGCTCTAACTGA 1467 0.4213 MSFLQGIIDSLSSILSSPNSSSNDSSPSNSNLPISSNMEGVPAAPSISNERIAYKLKGYFDLAKEEIDKAVRAEEWGLVDDAVLHYNNAQRILIEASSNAVPSYINSRFSSIPSLIKSISVVHVFIMLDGFKYVLSRRAGSKSTIQKTATQGQTAAVSLKPSNARKGVLQKNHQRTNHVDKDASPKSSQISGGNFDAKLVETINTAIVDRGPSVRWEDIAGLEKAKQALMEMVILPTKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESAGTFFNVSAASLTSKWVGEGEKLVRTLFMVAISRQPSVIFIDEIDSIMSTRLANENDASRRLKSEFLIQFDGVTSNPDDIVIVIGATNKPQELDDAVLRRLVKRIYVPLPEANVRRLLLKHKLKGQAFSLPSGDLERLVKDTEGYSGSDLQALCEEAAMMPIRELGSDILTVKPNQVRGLRYEDFRKAMSVIRPSLNKSKWEELERWNEEFGSN 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele41g0665 488 MobiDBLite consensus disorder prediction 165 189 - -
Lele41g0665 488 Pfam ATPase family associated with various cellular activities (AAA) 253 383 IPR003959 GO:0005524|GO:0016887
Lele41g0665 488 SMART AAA_5 249 385 IPR003593 -
Lele41g0665 488 MobiDBLite consensus disorder prediction 15 35 - -
Lele41g0665 488 FunFam Spastin, putative 212 396 - -
Lele41g0665 488 CDD AAA 238 383 - -
Lele41g0665 488 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 212 485 IPR027417 -
Lele41g0665 488 FunFam AAA-type ATPase family protein 384 466 - -
Lele41g0665 488 Gene3D - 212 482 IPR027417 -
Lele41g0665 488 PANTHER AAA DOMAIN-CONTAINING 103 487 - -
Lele41g0665 488 Pfam AAA+ lid domain 408 439 IPR041569 -
Lele41g0665 488 Gene3D - 384 466 - -
Lele41g0665 488 SMART smart 56 124 IPR007330 -
Lele41g0665 488 ProSitePatterns AAA-protein family signature. 355 374 IPR003960 GO:0005524|GO:0016887
Lele41g0665 488 FunFam AAA-type ATPase family protein 49 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele41g0665 Lele-ChrLele41 16608161 16615456 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele41g0665 212 438 Calmodulin-binding Proteins AT3G56690 42.373 6.08e-46 170