Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele41g0632 ATGGACGACGACGACGACGCGGCCAGCGACTGGGACGGTGGTGGGGATGTTAATGTTCCTCCGTCCAGTAAAAAAATGTACGCGTTGAGGACGAATCCTAATCGTTTAAAGAATAGGATTTGTGAGAATTGTGGTAAAGAGTTGTTGTCTTGGAAGTCCTTCCTTGAACATGGTATTGGTAAGTGCGTTTACGATGATGCTGACGAGTCGTTTGTCTCGTCGAACGGCAACGATATGTCGGGTGGTGGTGGTGGTGATGGTCGGAGAGGTTGTGGTAATTCGTCTAAGAGGAAGAGGTCTTCTGGAACCAATAAAGCGGGAAGCTTCAATAATAATAATAATAACAACACTAATTGCTCATCATCCAATGAAGAGGAAGACCTCGGCGCCGCTAACTGTTTGATGATGCTGTCAAACGCCACCGTGGAGGCCGATGAATCGTCTGCGTTGGCGATGAGCAAAGACGAAGAGAGAAGAAGAGACCCTAATTTGAGCTTCATGGTTCCAAAGTCACAACATGTCCCTTCAGACCATCATCATAACAAAGCCAAAGAGGTAGGCAACAACAGCAATAATAATAATAAGGGTTTGTTTGAATGCAAAGCATGCAAGAAAGTTTTCAATTCGCATCAAGCTTTGGGTGGTCACAGAGCCAGCCACAAAAAAGTCAAAGGTTGCTTCGCTGCTCGTCTCGACAACCTCGACGACACCGGCGCCGATGATGACGTCATCACCCACGAAGATCAATTCTTCCCAACGAACAACAAATCCAACACCCTTCACTTCGATCATCATGGATCTAACAAAAACAATAATAATACCTCATCGTCCTCTAACAGGAAATCGAAAGTCCACGAATGCTCGATATGTCACCGGGTTTTCTCGTCAGGACAAGCTCTTGGAGGACACAAGAGGTGTCATTGGATTACATCGAACGCACCCGACACTACGGCGTTGGCTAGGTTTCAGCAATTTCAAGAACAAATAGAACAACACATGAAAAGTAACGAAGTTGTTGTACCCAATAAGTTCAACGTCGTCGACTCTGACCCAATCGATCTTAAGCTCGATCTCAACCTCCCAGTTACATCGCCGGATTCCGGCCACCGCCGCAACACTAGTCAAAGCCATCAAATGGACAACGACAACAATGGCGAAGAATGCAAGAACAACAGCAACAAAAACATTAACATTAGCAATGGTTCGACGATACAAAACATCGTCGTCGTGGAAGACGACGAAGCTGACAGTAAGGTGAAGTTAGCAAAACTCAGTGAACTAAAGGACATGACCGGAGAAGGGAGTTCTTCGGCATGGTTACAGGTGGGAATCGGTTCTTCGACAACAACTGATGACGTGGGAACTGACCCATAA 1374 0.4607 MDDDDDAASDWDGGGDVNVPPSSKKMYALRTNPNRLKNRICENCGKELLSWKSFLEHGIGKCVYDDADESFVSSNGNDMSGGGGGDGRRGCGNSSKRKRSSGTNKAGSFNNNNNNNTNCSSSNEEEDLGAANCLMMLSNATVEADESSALAMSKDEERRRDPNLSFMVPKSQHVPSDHHHNKAKEVGNNSNNNNKGLFECKACKKVFNSHQALGGHRASHKKVKGCFAARLDNLDDTGADDDVITHEDQFFPTNNKSNTLHFDHHGSNKNNNNTSSSSNRKSKVHECSICHRVFSSGQALGGHKRCHWITSNAPDTTALARFQQFQEQIEQHMKSNEVVVPNKFNVVDSDPIDLKLDLNLPVTSPDSGHRRNTSQSHQMDNDNNGEECKNNSNKNINISNGSTIQNIVVVEDDEADSKVKLAKLSELKDMTGEGSSSAWLQVGIGSSTTTDDVGTDP 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele41g0632 457 ProSitePatterns Zinc finger C2H2 type domain signature. 287 307 IPR013087 -
Lele41g0632 457 MobiDBLite consensus disorder prediction 75 123 - -
Lele41g0632 457 MobiDBLite consensus disorder prediction 1 25 - -
Lele41g0632 457 MobiDBLite consensus disorder prediction 250 280 - -
Lele41g0632 457 ProSitePatterns Zinc finger C2H2 type domain signature. 200 220 IPR013087 -
Lele41g0632 457 MobiDBLite consensus disorder prediction 167 190 - -
Lele41g0632 457 SUPERFAMILY beta-beta-alpha zinc fingers 197 307 IPR036236 -
Lele41g0632 457 PANTHER OS02G0659100 PROTEIN 3 450 - -
Lele41g0632 457 MobiDBLite consensus disorder prediction 96 123 - -
Lele41g0632 457 MobiDBLite consensus disorder prediction 365 399 - -
Lele41g0632 457 ProSiteProfiles Zinc finger C2H2 type domain profile. 198 225 IPR013087 -
Lele41g0632 457 SMART c2h2final6 285 307 IPR013087 -
Lele41g0632 457 SMART c2h2final6 198 220 IPR013087 -
Lele41g0632 457 MobiDBLite consensus disorder prediction 359 399 - -
Lele41g0632 457 ProSiteProfiles Zinc finger C2H2 type domain profile. 285 307 IPR013087 -
Lele41g0632 457 Pfam C2H2-type zinc finger 198 222 - -
Lele41g0632 457 Pfam C2H2-type zinc finger 284 309 - -
Lele41g0632 457 MobiDBLite consensus disorder prediction 430 457 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele41g0632 Lele-ChrLele41 16264521 16265894 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele41g0632 121 319 C2H2 Transcription Factor Family AT1G02040 40.000 1.54e-30 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele41g0632 zf-C2H2_6 1.1e-12 CL0361