Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele41g0631 ATGGAGAAGCGCGAGTGCAAGCTCTGCTTCAAAACCTTCGCTAATGGCAGAGCTCTGGGAGGTCACATGAGGTCTCACATGATGAAGAAGAAGCTTCCACTACCTTCAAAACCAGAGGAATCTCGATCACCTTCTCCGACCTTACTGAGTTTCGAGGCCGACGACTCGCCTTGTTCTTCTTCATCATCTGAAGAAGATGACGAAGGAGACAACGGTCTGAGCTATATCTTAAGAGAGAATCCTAAGAGAAGCATTCGCATCGTAGATCCTGAGTTTTCGTTTGTTGTGGATACTAATGGCTCTGTGATTCAAGATAGAGAAAGCGAGACGGAGACCGAGTCATCGAAGAAGCCAACTCGGAAACGATCCAAGCGCGCTTGGAAACTCGGTAGTTTCTATGACGATGACGACGATCACTTCTGTAACAAGAAAATTCAGTATCAAGAAACGGTGGAAAAGCTCAAATCGAACGAACTCTGTAAGACCGAGTCGTGGATTGCGGAGCCTGAACCGGCGAGTTCGATCTCCGATACTATCACCGAAGAAGACGTCGCGTACTGCCTTATGATGCTTTCCAGAGACAAATGGAAGAGACAAAGCGATCTGAAAGACCGATACGCCGCCGAAGACCAGGACAAGGACGAAGACGAAGACGAAGAAGAAGATGAAGAGGAAGAAGAAGACGATGGCGATGAATCCGAGGGGGCTTTCAAAGAGTCATTGAAATCCAGAACTCGCGGTAAGTACACGTGTGAGACGTGCAAAAAAGTGTTTCGATCTTATCAAGCATTCGGTGGTCACAGAGCGAGTCACAAGAAAATCAAATTGGAGCTCGAGAATCATAATAATGGAGGAGGAAGCACTTCGTCTTCTTCAATGTTCGCTAAGAAAATTCACGAATGCCCAATCTGTTTCAGAGTGTTCTCTTCAGGTCAAGCTCTTGGGGGACACAAGAGGTCCCACCTTACCGGTTCATCGACATTTCCGATCACTCAAGCTTCGACTAAACCGGTCGAAAATTTCATAGATCTTAACCTTCCACCTGCTCCGACGGATGAAGACGAAATCAGCCAAATCGACAATTCTGGAATTTCAGATGCAGAATTCGTCGTTGATCATCGCATCATCAGACAGTGA 1137 0.4661 MEKRECKLCFKTFANGRALGGHMRSHMMKKKLPLPSKPEESRSPSPTLLSFEADDSPCSSSSSEEDDEGDNGLSYILRENPKRSIRIVDPEFSFVVDTNGSVIQDRESETETESSKKPTRKRSKRAWKLGSFYDDDDDHFCNKKIQYQETVEKLKSNELCKTESWIAEPEPASSISDTITEEDVAYCLMMLSRDKWKRQSDLKDRYAAEDQDKDEDEDEEEDEEEEEDDGDESEGAFKESLKSRTRGKYTCETCKKVFRSYQAFGGHRASHKKIKLELENHNNGGGSTSSSSMFAKKIHECPICFRVFSSGQALGGHKRSHLTGSSTFPITQASTKPVENFIDLNLPPAPTDEDEISQIDNSGISDAEFVVDHRIIRQ 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele41g0631 378 MobiDBLite consensus disorder prediction 202 241 - -
Lele41g0631 378 ProSitePatterns Zinc finger C2H2 type domain signature. 251 271 IPR013087 -
Lele41g0631 378 Pfam C2H2-type zinc finger 5 27 - -
Lele41g0631 378 Pfam C2H2-type zinc finger 249 273 - -
Lele41g0631 378 Pfam C2H2-type zinc finger 299 322 - -
Lele41g0631 378 MobiDBLite consensus disorder prediction 41 58 - -
Lele41g0631 378 SMART c2h2final6 249 271 IPR013087 -
Lele41g0631 378 SMART c2h2final6 4 26 IPR013087 -
Lele41g0631 378 SMART c2h2final6 299 321 IPR013087 -
Lele41g0631 378 ProSiteProfiles Zinc finger C2H2 type domain profile. 249 276 IPR013087 -
Lele41g0631 378 MobiDBLite consensus disorder prediction 211 234 - -
Lele41g0631 378 MobiDBLite consensus disorder prediction 30 74 - -
Lele41g0631 378 MobiDBLite consensus disorder prediction 104 118 - -
Lele41g0631 378 SUPERFAMILY beta-beta-alpha zinc fingers 249 321 IPR036236 -
Lele41g0631 378 ProSitePatterns Zinc finger C2H2 type domain signature. 301 321 IPR013087 -
Lele41g0631 378 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
Lele41g0631 378 Coils Coil 206 226 - -
Lele41g0631 378 MobiDBLite consensus disorder prediction 103 122 - -
Lele41g0631 378 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Lele41g0631 378 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 372 IPR044303 GO:0006355
Lele41g0631 378 Gene3D Classic Zinc Finger 246 321 - -
Lele41g0631 378 ProSiteProfiles Zinc finger C2H2 type domain profile. 299 321 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele41g0631 Lele-ChrLele41 16238792 16239928 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele41g0631 1 359 C2H2 Transcription Factor Family AT3G60580 40.054 2.08e-62 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele41g0631 zf-C2H2_6 2.8e-10 CL0361