LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele41g0623	ATGACTTCCGGTGTCTTTTCTACAAAGGAACAATCATCAGAACTAAGAAATCGTGCTTTTTCTTATTCCGATGTCCTTGAGATCACAAATAACTTACAAAACTTGATTGGAGAAGGCGGATTTGGAAAAGTTTACTTAGGCATCCTTAAGAATTGCACTCAAGTTGCAGTAAAGTTACTTTCTGAATCATCAAGGCAAGGTCATAGAGAATTTCGATCAGAGGTGGAACTTTTGATGTTTATTCATCATAGACATTTAGTTCCTCTGATTGGATATTGTGAAGAAGGAGACGTCAGGGCATTAATATATGAATATATGGCTAATGGGAACCTCCATCATCATTTATCAAGTAAGAAAGGAGGTGAATTGAAATGGAAAGACAGGCTTCAAATTGCATTGGATGCAGCGTTTGGATTGGATTACTTGCATAATGGCTGTAAGCCTGCAATCGTGCACAGAGACCTTAAGGCCTCCAACATTTTGCTGGACGATAATATGGAAGCTAAGATTGCAGATTTTGGATTGTCTAGAGCTTTTGCAAATGATATTGATAGTCATGTCTCAACTCGTCCTGCTGGGACATTTGGTTACCTTGATCCTGAATTTCAAAGTTCCGGAAACCTGACGAAAGGGAGCGATATTTATAGTTTTGGAGTAATTCTGCTAGAACTAGTGACCGGAAAGCCAGCAGCAAAAAGACAACCAGACAATTCTTTAAGTATTTTACTTCACTGGGTTTTACCAAAACTTCAAAGCAAGGATATACAATCCATTGTTGATCCAAGGTTAAAAGGACAATACAATGTTGATTCTGCTTGGAAATTTCTGGAGATAGCCATGTCATGCACCGCACCACTTGCAATTCAGAGGCCTGATATAAGTCAAGTGGTAGTTGAACTAAGGGAATGTTTGGCAATGGAGATAAGAATGGAAGGGACCACTCATAAAACCAATTCAAGCAGTTCCTTGGATATGAGTAATTCGCAATTTGATTCCAGCTTTAGTGCTCCATCTGCTAGATAG	1023	0.3891	MTSGVFSTKEQSSELRNRAFSYSDVLEITNNLQNLIGEGGFGKVYLGILKNCTQVAVKLLSESSRQGHREFRSEVELLMFIHHRHLVPLIGYCEEGDVRALIYEYMANGNLHHHLSSKKGGELKWKDRLQIALDAAFGLDYLHNGCKPAIVHRDLKASNILLDDNMEAKIADFGLSRAFANDIDSHVSTRPAGTFGYLDPEFQSSGNLTKGSDIYSFGVILLELVTGKPAAKRQPDNSLSILLHWVLPKLQSKDIQSIVDPRLKGQYNVDSAWKFLEIAMSCTAPLAIQRPDISQVVVELRECLAMEIRMEGTTHKTNSSSSLDMSNSQFDSSFSAPSAR	340

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele41g0623	340	ProSitePatterns	Protein kinases ATP-binding region signature.	36	58	IPR017441	GO:0005524
	Lele41g0623	340	FunFam	Leucine-rich repeat receptor-like protein kinase	7	105	-	-
	Lele41g0623	340	Gene3D	Transferase(Phosphotransferase) domain 1	106	326	-	-
	Lele41g0623	340	Gene3D	Phosphorylase Kinase; domain 1	12	105	-	-
	Lele41g0623	340	PANTHER	OS07G0107800 PROTEIN-RELATED	15	310	-	-
	Lele41g0623	340	CDD	STKc_IRAK	36	300	-	-
	Lele41g0623	340	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	150	162	IPR008271	GO:0004672\|GO:0006468
	Lele41g0623	340	SMART	serkin_6	30	304	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele41g0623	340	FunFam	LRR receptor-like serine/threonine-protein kinase IOS1	106	313	-	-
	Lele41g0623	340	Pfam	Protein tyrosine and serine/threonine kinase	32	300	IPR001245	GO:0004672\|GO:0006468
	Lele41g0623	340	MobiDBLite	consensus disorder prediction	315	340	-	-
	Lele41g0623	340	SUPERFAMILY	Protein kinase-like (PK-like)	15	300	IPR011009	-
	Lele41g0623	340	ProSiteProfiles	Protein kinase domain profile.	30	304	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele41g0623	Lele-ChrLele41	16110647	16112813	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele41g0623	20	326	Receptor kinase-like Gene Family	AT2G28970	52.922	8.86e-113	342

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-I-1	Lele41g0623		PK_Tyr_Ser-Thr	4.7e-50	CL0016