Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele41g0617 ATGGTGTTGGAACGATCTCCATTCTCATTGGATCGGAAAAAGTGGTCTAATGTGGAGAGGGAGAATCTTGCTAAGGGAATAAAGCAACAATTTCAAGAACTGGTGCTTCAAATGTCAATAAATCAAGACAAGTGGTTAAATTGTGAAGATCCCCTGATCAATCATATCCCATGGACCTGTGAGGAGGACAAGTTATTGTTGCACATAATCCAAGAGATTGGCAATAGGAACTGGTTTAAAATTGCCGCATCACTAAACACAAATAGGTCCCCATTTCCATGCTTGGCACGATACCAGAGGGGTTTAAATCCTTCCATGCTAAATAGCGAATGGACTGAGGAAGAAGATGCTCAACTTCGTTCTGCTGTTGCAATTTTTGATGTGAGCAATTGGCAGTCCGTAGCTTCTGTTTTAGAGCGGAGGACTGGAACTCAATGCTCTAATAGGTTGGTCACCTATGTTATGAGTTATTTTATGACTTCACATATGCATACAAGTTTTCCATGGAAGTATGCCACTCAAAATGTAACGGCTTGCATTTTATTTCTTGCATACCCTTCATTTACTGATATGCTGGTAGTTGATGGAGGAATTCACAGCACATTTCATCTAGGAAATGTTATTAGCTCCTAA 633 0.4013 MVLERSPFSLDRKKWSNVERENLAKGIKQQFQELVLQMSINQDKWLNCEDPLINHIPWTCEEDKLLLHIIQEIGNRNWFKIAASLNTNRSPFPCLARYQRGLNPSMLNSEWTEEEDAQLRSAVAIFDVSNWQSVASVLERRTGTQCSNRLVTYVMSYFMTSHMHTSFPWKYATQNVTACILFLAYPSFTDMLVVDGGIHSTFHLGNVISS 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele41g0617 210 SMART sant 54 104 IPR001005 -
Lele41g0617 210 SMART sant 107 156 IPR001005 -
Lele41g0617 210 CDD SANT 110 154 IPR001005 -
Lele41g0617 210 PANTHER SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 1 40 - -
Lele41g0617 210 Gene3D - 56 104 - -
Lele41g0617 210 Gene3D - 105 154 - -
Lele41g0617 210 SUPERFAMILY Homeodomain-like 86 153 IPR009057 -
Lele41g0617 210 ProSiteProfiles Myb-like domain profile. 50 102 IPR001005 -
Lele41g0617 210 Pfam Myb-like DNA-binding domain 58 119 - -
Lele41g0617 210 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 111 154 IPR017930 -
Lele41g0617 210 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 50 106 IPR017930 -
Lele41g0617 210 ProSiteProfiles Myb-like domain profile. 103 154 IPR001005 -
Lele41g0617 210 SUPERFAMILY Homeodomain-like 43 99 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele41g0617 Lele-ChrLele41 16050355 16051679 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele41g0617 1 149 MYB-Related Transcription Factor Family AT3G18100 43.500 2.10e-47 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele41g0617 Myb_DNA-bind_6 1.3e-14 CL0123