LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele41g0586	ATGCAAGTGAAGAAGAAGGATCAAGGGCCTCTAAGGAAAGGGCCATGGAAACCTGAGGAAGACGAAGTGCTACTAAGCCATGTCAACAAGTATGGTCCGAGCTCCATTCGATCCAAGGGCCTTCTTCAACGCACCGGAAAGTCTTGTCGTCTTCGTTGGGTCAACAAGCTTCGTCCAAACCTCAAGAATGGGTGCAAATTTTCGCTGGAAGAGGAGAGGGTGGTGATTGAGTTGCAGGCACAATTTGGGAACAAATGGGCCAAAATTGCGTCTTATTTGTCAGGAAGAACAGATAATGATGTCAAGAATTTCTGGAGTAGTAGGCAAAAGAGACTAGCTAGGATTCTTCATTCTACACCGTCATCATCCAAAACCCACAAGAACAAAAATGAAGTCCCCAGTTTCCACAATGTTCCCCCTCTGGAGGTTCCTAAGTTTAGTTCTTCATCTGATGAAGAATCTTCATCAAAGGCTCATCAGCCACTCTCATCATCCTTCACTGAGAATAATTCGGAGGTAAAAAAGATGGTTCCATTGCCAGATCTCATGAACTCCAACAACCCCTGGAGTTCTTGCGCAGTCGCTTCGATCAAACAAGAGTTTGCGACACCATTTGAGAGCTACATGAACACTATTGACATAAGCTCAGGAATTGGTTTCCCTCAGATTTTCCCATTCTCAAAGGAAAGTACTCAAGATCTCTTCTTGGTCAGAGCTAATAATGATTCTGCTGGTTTTATTGATGGATTAGGATTAGGAGGAGACCATTTGGGTGATGATGATGCATCAGAACTTGGAATAGGAACAGAGATTCGATTTCTAGGTTTTCCTTTCTATGATCCATCAGGAAGTTGCAGAATTGGGACAAGGGAACCAAATGGTAACAACCCCACAAACCCTGAAAGCTTATTCTTTGATGATTTTCCAGATGATATGTTTGATGATCATCTTCAGCCACCTCCAAGCCCATCATCATCAGAGCTGTGA	987	0.4347	MQVKKKDQGPLRKGPWKPEEDEVLLSHVNKYGPSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNGCKFSLEEERVVIELQAQFGNKWAKIASYLSGRTDNDVKNFWSSRQKRLARILHSTPSSSKTHKNKNEVPSFHNVPPLEVPKFSSSSDEESSSKAHQPLSSSFTENNSEVKKMVPLPDLMNSNNPWSSCAVASIKQEFATPFESYMNTIDISSGIGFPQIFPFSKESTQDLFLVRANNDSAGFIDGLGLGGDHLGDDDASELGIGTEIRFLGFPFYDPSGSCRIGTREPNGNNPTNPESLFFDDFPDDMFDDHLQPPPSPSSSEL	328

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele41g0586	328	MobiDBLite	consensus disorder prediction	285	328	-	-
	Lele41g0586	328	CDD	SANT	66	105	IPR001005	-
	Lele41g0586	328	SMART	sant	12	59	IPR001005	-
	Lele41g0586	328	SMART	sant	63	111	IPR001005	-
	Lele41g0586	328	CDD	SANT	15	57	IPR001005	-
	Lele41g0586	328	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	58	113	IPR017930	-
	Lele41g0586	328	FunFam	Transcription factor GAMYB	65	134	-	-
	Lele41g0586	328	ProSiteProfiles	Myb-like domain profile.	8	109	IPR001005	-
	Lele41g0586	328	Pfam	Myb-like DNA-binding domain	66	105	IPR001005	-
	Lele41g0586	328	Pfam	Myb-like DNA-binding domain	13	55	IPR001005	-
	Lele41g0586	328	PANTHER	TRANSCRIPTION FACTOR DUO1	4	325	-	-
	Lele41g0586	328	MobiDBLite	consensus disorder prediction	288	302	-	-
	Lele41g0586	328	FunFam	MYB transcription factor	13	62	-	-
	Lele41g0586	328	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	11	53	IPR017930	-
	Lele41g0586	328	MobiDBLite	consensus disorder prediction	116	170	-	-
	Lele41g0586	328	Gene3D	-	13	62	-	-
	Lele41g0586	328	SUPERFAMILY	Homeodomain-like	11	105	IPR009057	-
	Lele41g0586	328	MobiDBLite	consensus disorder prediction	143	170	-	-
	Lele41g0586	328	Gene3D	-	65	135	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele41g0586	Lele-ChrLele41	15409789	15411502	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele41g0586	1	323	MYB Transcription Factor Family	AT3G60460	45.697	7.35e-67	210

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Lele41g0586		Myb_DNA-binding	3.3e-10	CL0123