Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele41g0525 ATGCCGCCGAGGACGGTGAAGAGAGGGGTTGCAGCTGCGGCCAGGAGAGGGGGCAGAGGTGGCAGAGGAGCGCCGAAGGCTGCCCAGAATCAGCATAATCTTGATTCTGTACAAGAGATGGCTTTTGATATTAACCAAGTCGCTTCAGAGGCTGAAGAAGCGAATCCTGTCACAAATGGGTCGGCTGCTGTGAAAAATGACGAAGAGGAGGTTAAGGAGTCAATAGATGAATATGAAAAAGATGAACGCTTGGATCTGGAGGATAATGATCCAGAGTATGAACCTGAGGAGTATGGTGGAGTTGATTATGATGAGAAGGAAATTGAGCTAGATGATGTTCAGGAGGTGGGAGATGAGATAGAGGAAGAACCTGACGAGAATTTAGGTGAAGAGGAGGGTGATATGGTTGAGGAGGAAGTGGAAGACGTTCATGGAGAACTTGAGGGTGAAGAGGATGACAAGCATCCTGGAGAGGGGCATGAGCATGCGGAGATTGCTGATGTAGAAGATGAACACCATGAAGGTTTGAAAGAGAGGAGAAAGCGGAAGGAATTTGAAGTTTTTGTTGGAGGCTTAGATAAAGATGCTACCGCGAATGATCTGATGAAGGCTTTTAGTGCGGTTGGTGAGGTTACTGAAGTGAGGCTTATGATGAATCCTCAGACTGAAAAGAACAAGGGTTTTGCATTCTTACGATTTGCAACTGTGGAACAAGCTAAACGAGCTGTAGCAGAGCTAAAAAATCCAGTGATTAATGGCAAACAATGTGGGGTAACCCCCAGTCAGGACAGTGACACCCTCTTTTTGGGTAACATATGCAAGACATGGACAAAGGAAGCTGTAAGTATATGTTCGTTAAAGGAGAAGTTAAAGCATTATGGAGTTGACAATGTGGAGGATCTGACTTTAGTAGAAGATAGTAATAATGAGGGAATGAATCGCGGATTTGCCTTTTTAGAATTTTCATCTCGGTCAGATGCTATGGATGCCTTTAAGCGATTGCAGAAGAGAGATGTTGTGTTTGGAGTTGATAGGCCTGCAAAGGTTTCCTTTGCAGATTCCTTTATTGACCCGGGTGATGAGATTATGGCACAGGTCAAAACTGTATTTATTGATGGTCTGCCTCCCTCATGGGATGAGGATCGTGTACGGGGTCTTCTTAAGAGATATGGAGAGATTGAGAAGATTGAGCTTGCCAGAAACATGCCTTCTGCTAAGAGGAAGGACTTCGGATTTGTTACATTTGATACCCATGAAGCTGCTGTGACATGTGCCAAAAGCATTAATAATTCTGAGATAGGTGAAGGAGACAGTAAGGCAAAAGTTAGGGCAAGATTATCGAGACCACTTCAAAGAGGCCATGGAAAACATGGTGGTTGTGGGGAGTTTCGGTCTAATCGTGCTTCTGGAAGAGTCACAAGGCCTTCATGGAGTCGACCAGCACCTCATAGTCTACGTGCCTGTGGGATAAGGGGCATTAGTAGTTGTGTTCCTCCAGTTAGGCCTGTTAGTCTGAGAGATAGACGTCCAGCCATGCCAATGACAGTAAAAGCTAGGCTAATGGCTCCTCCGGCTAGATCCTATGATAGGAGATTGGCTGTTCCTGCACATCCAAAAAGTAACATGAAGAGAGATTATGGTCGTCGTGAGGATTTGCCACCACCAAGAAGTAGAGTAGCTTCTGATTACAGCTCTCGGGTGGCCTCTGAGAGGCGCTCATCTTACAGGGACTATCCTGCCCGTGGCCCCACCTACTCTGAGCTTCCTAGAAGTACTTCATCTCGTGCGGCACCTAGGAGGGGTTATGTGGATGGTGGCTATGGTCAAAGATTTGAGAGGCCTCCTCCTCCTCCACCTCCAAGTTACCGTGAAGGACGCCCTCGTGACTATGATACTCTCTCTGGCTCAAAGCGCCAATATGCTGCCATACATGATGTTCCTCCACGATATGCAGACCGTGGTGCTCGCCAATCGAGAGCACGATTGGACTATGACTATGGCAGTAGTACTTCACAGTATGGAGATGCTTATGGTGATAGACTTGGAAGATCTAGTATGGGCTATAGTGGTGGCAGGAGTTCAATGTCAAGTCAAGACTCACATGGGATGTATAGTAGTCGTCAGGGCATGAGTTACAGTGGAGGTTCTTTTGGTGGCAGTGATGTTGGTGGTATGTACTCCTCCAGTTATAGTGGTGATTACATGTCTCGTGGAAATGATGTTGGTGGTGGCACATACTCTTCGCTATATCCTGGCAGAGGTGTGGGTGGTAGTAGCAGTTACATGGGTGGTAGTGGGTCTGGGTCTTATTATTAA 2316 0.4659 MPPRTVKRGVAAAARRGGRGGRGAPKAAQNQHNLDSVQEMAFDINQVASEAEEANPVTNGSAAVKNDEEEVKESIDEYEKDERLDLEDNDPEYEPEEYGGVDYDEKEIELDDVQEVGDEIEEEPDENLGEEEGDMVEEEVEDVHGELEGEEDDKHPGEGHEHAEIADVEDEHHEGLKERRKRKEFEVFVGGLDKDATANDLMKAFSAVGEVTEVRLMMNPQTEKNKGFAFLRFATVEQAKRAVAELKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEAVSICSLKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVVFGVDRPAKVSFADSFIDPGDEIMAQVKTVFIDGLPPSWDEDRVRGLLKRYGEIEKIELARNMPSAKRKDFGFVTFDTHEAAVTCAKSINNSEIGEGDSKAKVRARLSRPLQRGHGKHGGCGEFRSNRASGRVTRPSWSRPAPHSLRACGIRGISSCVPPVRPVSLRDRRPAMPMTVKARLMAPPARSYDRRLAVPAHPKSNMKRDYGRREDLPPPRSRVASDYSSRVASERRSSYRDYPARGPTYSELPRSTSSRAAPRRGYVDGGYGQRFERPPPPPPPSYREGRPRDYDTLSGSKRQYAAIHDVPPRYADRGARQSRARLDYDYGSSTSQYGDAYGDRLGRSSMGYSGGRSSMSSQDSHGMYSSRQGMSYSGGSFGGSDVGGMYSSSYSGDYMSRGNDVGGGTYSSLYPGRGVGGSSSYMGGSGSGSYY 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele41g0525 771 CDD RRM_SF 267 339 - -
Lele41g0525 771 MobiDBLite consensus disorder prediction 80 106 - -
Lele41g0525 771 CDD RRM_SF 369 434 - -
Lele41g0525 771 Coils Coil 103 123 - -
Lele41g0525 771 MobiDBLite consensus disorder prediction 65 79 - -
Lele41g0525 771 MobiDBLite consensus disorder prediction 115 134 - -
Lele41g0525 771 MobiDBLite consensus disorder prediction 449 483 - -
Lele41g0525 771 CDD RRM_SF 187 258 - -
Lele41g0525 771 FunFam RNA recognition water-stress protein1 357 478 - -
Lele41g0525 771 SUPERFAMILY RNA-binding domain, RBD 186 280 IPR035979 GO:0003676
Lele41g0525 771 MobiDBLite consensus disorder prediction 527 633 - -
Lele41g0525 771 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 265 354 IPR000504 GO:0003723
Lele41g0525 771 FunFam Heterogeneous nuclear ribonucleoprotein Q 266 353 - -
Lele41g0525 771 Gene3D - 266 353 IPR012677 -
Lele41g0525 771 MobiDBLite consensus disorder prediction 144 179 - -
Lele41g0525 771 MobiDBLite consensus disorder prediction 532 556 - -
Lele41g0525 771 MobiDBLite consensus disorder prediction 687 706 - -
Lele41g0525 771 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 367 449 IPR000504 GO:0003723
Lele41g0525 771 MobiDBLite consensus disorder prediction 49 106 - -
Lele41g0525 771 Gene3D - 110 265 IPR012677 -
Lele41g0525 771 SUPERFAMILY RNA-binding domain, RBD 264 434 IPR035979 GO:0003676
Lele41g0525 771 MobiDBLite consensus disorder prediction 148 179 - -
Lele41g0525 771 Coils Coil 61 84 - -
Lele41g0525 771 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 39 763 - -
Lele41g0525 771 SMART rrm1_1 266 350 IPR000504 GO:0003723
Lele41g0525 771 SMART rrm1_1 368 443 IPR000504 GO:0003723
Lele41g0525 771 SMART rrm1_1 186 259 IPR000504 GO:0003723
Lele41g0525 771 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 185 263 IPR000504 GO:0003723
Lele41g0525 771 Gene3D - 357 475 IPR012677 -
Lele41g0525 771 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 286 338 IPR000504 GO:0003723
Lele41g0525 771 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 369 434 IPR000504 GO:0003723
Lele41g0525 771 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 187 255 IPR000504 GO:0003723
Lele41g0525 771 FunFam Heterogeneous nuclear ribonucleoprotein Q isoform A 119 265 - -
Lele41g0525 771 MobiDBLite consensus disorder prediction 1 31 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele41g0525 Lele-ChrLele41 7161369 7166790 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele41g0525 187 429 Eukaryotic Initiation Factors Gene Family AT4G34110 24.400 5.02e-13 70.9