Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele41g0497 ATGGGTTCTTCTTTTCTGAACACCCCATATAAGCCATGGACGCCTGCAGATGCTGTTCTTCAAGATTGTTCTCAAGGAATCTGCAGCTTCTATTGCCCTCAATGGTGCCCCGTCGTCTACCCTCCTCCTCCTTTACCTTCTCTCACCGACATCGGAGTTGCCGCCACCGCCGGTGACGATGACTCTTCTTCATTTGAGCTCTCTCCCCTCATAGTCGCTCTCATCGGAATCCTAGGAAGTGCTTTCGTCTTGATCACTTACTACACTATCATCTCTCGATTCTGCACAAGACGAACACGAATCCACCAAAACGACACCAACCAATGGGTAAACGACAATGACGAGTCGGCGATTCAAGCCTCGTCTTCTTCCGTTAATACCGGCGGCGGCGGCTTAGACGACGCCGGCATCACATCTATCACAGTATGTAAGTACAAGAAAGGAGATGGATTAGTCGAAGGTACGGAATGCTCTGTTTGTCTCAGCGAATTTCAAGATTGCGAGAGCTTGAGATTGTTACCTAAATGCAACCACGCGTTTCATCTTCCTTGTATCGATACATGGTTGAGATCGCATTCGAGTTGTCCTCTATGCAGATCCAATATTGTCGAATCTAACACTTGTTCATCATCATCATCTTCTTCTTCTTCTTCTGGTAATTTACCGAACCAAAGAGAGAATTCTCAGTTGCAGGAAGCTTCGCGAACACAGAGCGTGACTGTGTCTGCGTTGGAATACCAGTATAGTAACGATACAGTGATAGTGATTCAGGGTTCCGAACAGGAAATTCAGGTCGGTTTTGCAGAAAATAATTTGGAGGAGAGGAATGGGAGTGAATCGAATCAACGAAGTATGTTGTTGATTGCTGATATATTGAGGAGTATTGAAGATGATGAAGATGAGGATGAAGAAATCGAGATTGGATCGTCGAAGGAAAATCGCAGAGAAGAAGAAAAGAGGAAAGTGGGATCGGAATGA 978 0.455 MGSSFLNTPYKPWTPADAVLQDCSQGICSFYCPQWCPVVYPPPPLPSLTDIGVAATAGDDDSSSFELSPLIVALIGILGSAFVLITYYTIISRFCTRRTRIHQNDTNQWVNDNDESAIQASSSSVNTGGGGLDDAGITSITVCKYKKGDGLVEGTECSVCLSEFQDCESLRLLPKCNHAFHLPCIDTWLRSHSSCPLCRSNIVESNTCSSSSSSSSSSGNLPNQRENSQLQEASRTQSVTVSALEYQYSNDTVIVIQGSEQEIQVGFAENNLEERNGSESNQRSMLLIADILRSIEDDEDEDEEIEIGSSKENRREEEKRKVGSE 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele41g0497 325 Pfam Ring finger domain 156 199 IPR001841 -
Lele41g0497 325 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 132 209 IPR013083 -
Lele41g0497 325 FunFam RING-H2 finger protein ATL54 132 205 - -
Lele41g0497 325 PANTHER RING-H2 FINGER PROTEIN ATL16 60 279 IPR044600 GO:0016567|GO:0016740
Lele41g0497 325 MobiDBLite consensus disorder prediction 294 325 - -
Lele41g0497 325 MobiDBLite consensus disorder prediction 209 234 - -
Lele41g0497 325 MobiDBLite consensus disorder prediction 307 325 - -
Lele41g0497 325 SMART ring_2 157 198 IPR001841 -
Lele41g0497 325 CDD RING-H2_EL5_like 156 199 - -
Lele41g0497 325 ProSiteProfiles Zinc finger RING-type profile. 157 199 IPR001841 -
Lele41g0497 325 SUPERFAMILY RING/U-box 151 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele41g0497 Lele-ChrLele41 5043278 5044255 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele41g0497 12 311 C3H Transcription Factor Family AT3G03550 42.405 1.05e-67 214